Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 223 / 6e-66 Protein kinase superfamily protein (.1) AT2G23770 198 / 5e-57 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 194 / 2e-55 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT4G02010 195 / 4e-55 Protein kinase superfamily protein (.1) AT1G51940 189 / 3e-53 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G23540 187 / 2e-52 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G54820 181 / 9e-52 Protein kinase superfamily protein (.1) AT3G58690 179 / 2e-51 Protein kinase superfamily protein (.1) AT2G25220 179 / 2e-51 Protein kinase superfamily protein (.1.2) AT1G10620 184 / 5e-51 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021889 [exp] 599 / 0 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041171 [exp] 597 / 0 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10016299 [exp] 228 / 1e-67 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019662 [exp] 212 / 4e-64 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1) Lus10008586 [exp] 218 / 9e-64 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10016793 [exp] 213 / 2e-62 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030022 [exp] 212 / 2e-62 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10000577 [exp] 211 / 2e-61 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 211 / 3e-61 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160600 [exp] 635 / 0 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 620 / 0 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 257 / 1e-78 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.014G040000 [exp] 246 / 4e-75 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 234 / 4e-70 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 233 / 1e-69 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 220 / 2e-64 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 211 / 8e-62 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 209 / 6e-61 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.005G128401 [exp] 200 / 8e-61 AT2G33580 196 / 1e-57 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039406 pacid=23175598 polypeptide=Lus10039406 locus=Lus10039406.g ID=Lus10039406.BGIv1.0 annot-version=v1.0 ATGGTTTCCTATGTGTTTCAGCCGTCTGACGATCTTTCTCGACTAGCTGCCACTTTTGGGGTTCCCAAGAAATCGATTGCTGATGCTAATGGGAACCGGA TCAGCCCTCTGGATACGATCTTCATTCCGGTCAATCGGTTGCCGGTTCTTGCTCAAGGGAATTCCAGTACTAATTCTACTCCTCCTTCTCCTCCTCCACC TTCTTCTGTGAAAACGGAGAGGAAAGGCCTGATTAGAGGATTGGCAGCCGGGATTGGGGTTTGTGGGGTTTTGCTGGTTATGGTGATTGGGGTTTGGGTT TATAGGGAGAAGGCGTTTAAGGAGGAAGCAGCTGGGAAATGGCGAGATGAGGAGAAGCAGAGGAAGGGGTTTTATATGGCAGAAGGAGGAGGGAAAGGGA TCAAGGAAATGGAGGCAAGTTTAATGGCGGATGTATCAGAGTGCTTGGATAAGTACAGGGTGTTTAAGATGGATGAGTTGAGAGAAGCTACTCATGGGTT CAGTGAGGATTCTTTGATTGAAGGCTCAGTCTTTAAAGGTCAGATTGATGGCGTTCAGTATGCCATCAAGAAGATGAAGTGGAATGCTCGTGAAGAGCTC AAGATCTTGCAAAAGGTAAACCATGGAAATCTAGTACAACTAGAGGGTTTCTGCATTGATCCTCAAGAAGCCAACTGCCATCTAGTCTACGAATACATCG AAAATGGTTCACTCCATTCTTGGCTCCACACCGACAAGAGTCAAGAATTGAGTTGGAAATCAAGGGTACGAATAGCTATCGACGTAGCCAACGGCCTCCA ATACATTCACGAGCACACGAGGCCCCGCGTGGTGCACAAGGACATCAAAAGCACCAACATTCTCCTTGACTCGAACATGAGGGCCAAAATAGCAAACTTT GGGTTGGCCAAATCCGGATGCAACGCCATAACAATGCACATTGTTGGGACGCAAGGCTACATCGCCCCCGAGTACCTGGCTGATGGGGTTGTCTCTACAA AGATGGATGTGTTTGCGTTTGGTGTGATTCTGCTTGAGCTCGTTTCAGGGAAGGAAGCCATTGATGAGGATGGTAATGTGTTGTGGGGTGAAGTTGGTCG GGTTGTGGAAGGAGGAGGAGGAGGGAGTCCTGAAGGGATCAGGAAAGTGGAGAAAGTGAGGAGTTGGGTTGATGAAGCTCTAGTGGAAGAGACGTATTCG ATAGAGAGTGTTGTGAATGTTATGACAGTGGCAGCTGCATGTGTGCATAAAGATCCAACAAAGAGGCCGAGCATGGTGGATGTTGTGTATGCTTTGTGTC GGAGCGATGACTTGTTTTTTGACGTCTCGGGTGAAGGCTTGTCTAATCCTGACGTCATTGCAAGATAG
AA sequence Show only first row Show all	>Lus10039406 pacid=23175598 polypeptide=Lus10039406 locus=Lus10039406.g ID=Lus10039406.BGIv1.0 annot-version=v1.0 MVSYVFQPSDDLSRLAATFGVPKKSIADANGNRISPLDTIFIPVNRLPVLAQGNSSTNSTPPSPPPPSSVKTERKGLIRGLAAGIGVCGVLLVMVIGVWV YREKAFKEEAAGKWRDEEKQRKGFYMAEGGGKGIKEMEASLMADVSECLDKYRVFKMDELREATHGFSEDSLIEGSVFKGQIDGVQYAIKKMKWNAREEL KILQKVNHGNLVQLEGFCIDPQEANCHLVYEYIENGSLHSWLHTDKSQELSWKSRVRIAIDVANGLQYIHEHTRPRVVHKDIKSTNILLDSNMRAKIANF GLAKSGCNAITMHIVGTQGYIAPEYLADGVVSTKMDVFAFGVILLELVSGKEAIDEDGNVLWGEVGRVVEGGGGGSPEGIRKVEKVRSWVDEALVEETYS IESVVNVMTVAAACVHKDPTKRPSMVDVVYALCRSDDLFFDVSGEGLSNPDVIAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33580			Protein kinase superfamily pro...		Lus10039406 [exp]	0	1
					Lus10015401 [exp]	14.9	0.8393
AT4G37530			Peroxidase superfamily protein...		Lus10011079 [exp]	16.8	0.8317
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000532 [exp]	17.7	0.8391
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10009717 [exp]	32.2	0.8345
AT4G40020			Myosin heavy chain-related pro...		Lus10000283 [exp]	39.0	0.8035
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	58.0	0.8156
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10014133 [exp]	59.1	0.7749
AT5G06280			unknown protein		Lus10016973 [exp]	68.3	0.8037
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	80.5	0.8118
AT3G25570			Adenosylmethionine decarboxyla...		Lus10035083 [exp]	86.7	0.8121

Compare expression of checked genes

Lus10039406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.