Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43745 946 / 0 Protein of unknown function (DUF1012) (.1) AT5G02940 885 / 0 Protein of unknown function (DUF1012) (.1) AT5G49960 160 / 1e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013455 [exp] 188 / 1e-49 AT5G49960 936 / 0.0 unknown protein Lus10035805 [exp] 162 / 7e-41 AT5G49960 1146 / 0.0 unknown protein Lus10036585 [exp] 146 / 6e-36 AT5G49960 1029 / 0.0 unknown protein Lus10041014 [exp] 145 / 7e-36 AT5G49960 749 / 0.0 unknown protein Lus10041011 [exp] 110 / 8e-25 AT5G49960 605 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G078600 [exp] 1079 / 0 AT5G43745 966 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.008G160700 [exp] 1073 / 0 AT5G43745 1008 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.019G097000 [exp] 197 / 1e-52 AT5G49960 907 / 0.0 unknown protein Potri.013G128100 [exp] 193 / 2e-51 AT5G49960 927 / 0.0 unknown protein Potri.003G008800 [exp] 164 / 6e-42 AT5G49960 1142 / 0.0 unknown protein Potri.004G223400 [exp] 164 / 9e-42 AT5G49960 1134 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0582 [flax] [poplar] TrkA_C PF06241 [flax] [poplar] Castor_Poll_mid Castor and Pollux, part of voltage-gated ion channel
Representative CDS sequence Show only first row Show all	>Lus10039407 pacid=23175554 polypeptide=Lus10039407 locus=Lus10039407.g ID=Lus10039407.BGIv1.0 annot-version=v1.0 ATGAAGCTGTTCGTTGGGACTGCTGCTTCTATGTGTTTCATATTAAACCTGAGACATTTTAAGTTATTCAGTCTTCTAATAAAGATGGTCCACAACTCGG CTCCCTCTTTGCTTTTAAAACCTGGAGGCGCTGGCTTACCTTTTGCTTGTATGTCTAGCAAACCCACGCCTCTGCGGTTGGACGTGTCATTTCCATCACT TCAAGATATTAAATGGAGCCTGGCACGCTTAGTATACCTGTTCAACATTCATCTGGAAAGAAATGTTGCAACGTTCCTCATAGCGCTTCTTGCAGCTTGC TTCGCATTCATTGTAATTGGCGGTCTTCTGTTTGCTAAGTTTAGGGGTGACAGACAGTCTCTGGAGGACTGCTTTTGGGAAGCTTGGGCATGTCTCTGTT CGTCATCCACGCATTTAAGGCAAAGGACACGTATTGAACGTGTCATCGGCTTTGTGCTTGCAATATCGGGGATATTGTTCTACTCTCGGTTGTTGACCAC AATGACAGAAGAATTCAGAAATAATATGCGAAGGTTCAGGGAAGGGGCACAAGTGCAAGTCTTGGAGGTGGATCATATCATAATCTGTGGGATAAATAAC CACTTGGCCTTTATACTTAAGCAGCTAAATAAATATCAGGAATTTGCAGTCCGCTTGGGTACTGCTACTGCTAGGAGGCAGAGAATTCTTCTCATGTCTG ATACTCCAAGGAAGCAGATGGACCGGATAGCTGATAATATAGCCAAAGATCTTAACCATATTGATATCCTCACTAAAAGTTGCAGCCTTAATCTGACAAA GTCTTTTGAAAGATCTGCGGCTGATAAGGCTCGTGCCATAATTATACTTCCACCAAAAGGTGATCGGTATGAGACTGATACCAATGCATTCCTCTCCGTG CTAGCGCTTCAGCCTATTGCAAATATGGAGTCTATTCCCACCGTGGTTGAGGTTTCAAACACAAATACATGTGAACTCTTGAAGTCAATTTCTGGATTGA AAGTGGAGCCAGTAGAAAATGTTGCATCCAAATTGTTCGTTCAATGCTCAAGGCAGAAAGGACTCATAAAGATCTATCGACACTTGCTCAATTACCGAAA AAACGTATTCAATCTTTCTAATTTCCCCAATTTAGAAGGAGTTAGTTATAGGCAAGTAAGACGGTCTTTGCAAGAGGTGATTGTTTGTGGTATTTACCGA AATGGAAAGACGGATTTTCACCCCAATGATGAGGAAATTCTACTTCAAACTGATAAAATTTTGTTCATTGGGCCTATTCATGGGAGAACTACACCACAAA TTGCAGATTCTGGCTTACTGGAAGAACAAACTTCTTCATTTAAAGTTGTGGAAGTTGTAAAGGAGCATGCTGATAAATCGAACCATTCTGTAGAATTGAT GAAAAAAAGACTTTCTAATATTGTAAAGCGACCTGCTAGATCAGGGTCAAAGGCATCAGACTGGACACTAGGACCGAAAGAATGTATTCTCTTACTTGGC TGGCGCTCAGACGTGGTTGAAATGATTAAGGAGTATGACAACTATCTTGGACCTGGTAGCAGAGTGGAGATACTATCAGATGTACCATTAGATGAGAGGT GGAGGGCAAGTAATATTCTCAAGCTAAAGAAAGGAACACTGAACCATGTCGAGGTTTGCCATAGGGTGGGAAACCCCATGGACAATGATACCTTGAAAGA GACCATAATCAGCATTCAGAACTCTTTCAAGCAAGGCAAAGGTGTTCCTTTATCCATTGTCGTGATATCTGATAGGGGATGGCTAGATGGAGATCCATCC AGAGCAGACAAGCAGTCTGCATTTTCTCTTCTCCTTGCTGAAAGCATATGCAATAAACTTGGGGTGAAGGTACAGAATCTTGTAGCAGAGATTGTCGATT CAAAGTTAGGCAAACAAATTTCAAGAATAAAGCCATCCTTAACCTACATAGCAGCAGAGGAAGTTATGAGCCTAGTCACAGCCCAAGTCACGCAGAACAA TGAACTAAATGATGTGTGGAAAGACATTCTAAATGCAGAGGGCGACGAAATCTACATAAAGGATATAAGCCTGTACATGAAAGAGGGTGAGAATCCTTCA TTTGCTGAACTCTCCGAAAGAGCAAGGCTGCGACGGGAGGTTGTCATTGGATATCTGAAAGATCATAGGAAGGTCATAAATCCGATTCCGAAAACAGAAC CTCTCTCCTTAGCATTGACCGACTCATTAATTGTGATCTCTGAGCTCGAAGGAGAACAGCCCATCATCGTGTAA
AA sequence Show only first row Show all	>Lus10039407 pacid=23175554 polypeptide=Lus10039407 locus=Lus10039407.g ID=Lus10039407.BGIv1.0 annot-version=v1.0 MKLFVGTAASMCFILNLRHFKLFSLLIKMVHNSAPSLLLKPGGAGLPFACMSSKPTPLRLDVSFPSLQDIKWSLARLVYLFNIHLERNVATFLIALLAAC FAFIVIGGLLFAKFRGDRQSLEDCFWEAWACLCSSSTHLRQRTRIERVIGFVLAISGILFYSRLLTTMTEEFRNNMRRFREGAQVQVLEVDHIIICGINN HLAFILKQLNKYQEFAVRLGTATARRQRILLMSDTPRKQMDRIADNIAKDLNHIDILTKSCSLNLTKSFERSAADKARAIIILPPKGDRYETDTNAFLSV LALQPIANMESIPTVVEVSNTNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLSNFPNLEGVSYRQVRRSLQEVIVCGIYR NGKTDFHPNDEEILLQTDKILFIGPIHGRTTPQIADSGLLEEQTSSFKVVEVVKEHADKSNHSVELMKKRLSNIVKRPARSGSKASDWTLGPKECILLLG WRSDVVEMIKEYDNYLGPGSRVEILSDVPLDERWRASNILKLKKGTLNHVEVCHRVGNPMDNDTLKETIISIQNSFKQGKGVPLSIVVISDRGWLDGDPS RADKQSAFSLLLAESICNKLGVKVQNLVAEIVDSKLGKQISRIKPSLTYIAAEEVMSLVTAQVTQNNELNDVWKDILNAEGDEIYIKDISLYMKEGENPS FAELSERARLRREVVIGYLKDHRKVINPIPKTEPLSLALTDSLIVISELEGEQPIIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	0	1
					Lus10008816 [exp]	4.0	0.9538
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	5.7	0.9190
					Lus10010481 [exp]	6.6	0.9481
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	7.5	0.9102
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	8.5	0.9476
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014690 [exp]	9.5	0.9265
AT1G13570			F-box/RNI-like superfamily pro...		Lus10002959 [exp]	9.5	0.8359
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	9.8	0.9467
					Lus10002266 [exp]	10.4	0.9321
					Lus10014719 [exp]	10.5	0.9431

Compare expression of checked genes

Lus10039407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.