Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45140 129 / 1e-33 NRPC2 nuclear RNA polymerase C2 (.1) AT4G21710 82 / 2e-17 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT3G18090 49 / 2e-06 NRPD2B nuclear RNA polymerase D2B (.1) AT3G23780 47 / 8e-06 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT1G29940 42 / 0.0003 NRPA2 nuclear RNA polymerase A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028778 [exp] 135 / 1e-35 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10017504 [exp] 133 / 5e-35 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10011182 [exp] 84 / 9e-18 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10015446 [exp] 83 / 1e-17 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10010252 [exp] 67 / 2e-12 ND / Lus10019580 [exp] 61 / 3e-11 ND / Lus10009191 [exp] 58 / 6e-10 ND / Lus10036279 [exp] 57 / 7e-10 ND / Lus10031015 [exp] 57 / 2e-09 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003000 [exp] 129 / 2e-33 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.004G043200 [exp] 82 / 2e-17 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.001G030750 [exp] 45 / 4e-05 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.018G019100 [exp] 44 / 0.0001 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04565 [flax] [poplar] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3
Representative CDS sequence Show only first row Show all	>Lus10039408 pacid=23175652 polypeptide=Lus10039408 locus=Lus10039408.g ID=Lus10039408.BGIv1.0 annot-version=v1.0 ATGTCCTTTGGAAACCAAAAGCAAATCTCTTATCTCATGCATTCTATCCGGCGACGTTTTAGTGAAAATGAGAAAGACGGAAGGGCATTGTCTATCCTCA GAGACATAATTCTTGCTGATGTTGGCGTGGGATTCACTTTCCTACTAAATTCCATTCTCTTAGAAATAGAGTCACTCGGTTACGTTCACGATCTTGACTT ACTGCCTCAGAAGGATCATGGTGTAATAATCAAGGGTAACAAGGATGCCATGAATGACAAGGTCCTTTCTAGGTTATCTTTCATTGGTTCTTTGGGTCAT CTGACGAGAATCTCTTCACATGTTGCAAAGTCCAGGAAAGTTCGTGGACCTAGAGCATTGCAACCTAGTCAGTGGGGTATGCTCTGTCCTTGTAATACCC CGGTAGGTGAAGCTTGTGGGCTGGTGAAGAACTTGACACTAATGACTCATGTTACCCCTGACGGAGAAGATGGCCCTTTAGTTGCCCTTCAGTCTCGTGG TCAGAAGCTGCTGCCAGCTGTAAATGTGATGGGGAATCCTGTAGATGATTGGAGAGAATATGTTGTGGCATATCCTACTAACGTTGACGAGGTCTCAAAG GGCGACGTACAACCCACCGCTGATGCTGTGGATGAAGACGACGTTGACGACGAGCTTGAGTACGATCTGGGTAACAACAATGGGGGAGAGGAAGATAACC ATGCCTCGAGTGAGTTCGACAACAATACGCCGATTGGCCCTCTCCATCAAGAGGGGAAGGATGCTGATGTTATAATCGGTACAGGTGCTGCAACATCTTC TCGTGTCCCACCATGA
AA sequence Show only first row Show all	>Lus10039408 pacid=23175652 polypeptide=Lus10039408 locus=Lus10039408.g ID=Lus10039408.BGIv1.0 annot-version=v1.0 MSFGNQKQISYLMHSIRRRFSENEKDGRALSILRDIILADVGVGFTFLLNSILLEIESLGYVHDLDLLPQKDHGVIIKGNKDAMNDKVLSRLSFIGSLGH LTRISSHVAKSRKVRGPRALQPSQWGMLCPCNTPVGEACGLVKNLTLMTHVTPDGEDGPLVALQSRGQKLLPAVNVMGNPVDDWREYVVAYPTNVDEVSK GDVQPTADAVDEDDVDDELEYDLGNNNGGEEDNHASSEFDNNTPIGPLHQEGKDADVIIGTGAATSSRVPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10039408 [exp]	0	1

Compare expression of checked genes

Lus10039408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.