Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48310 773 / 0 CHR18, CHA18 chromatin remodeling factor18 (.1) AT5G07810 145 / 1e-35 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) AT2G13370 118 / 5e-27 CHR5 chromatin remodeling 5 (.1) AT3G06010 114 / 9e-26 ATCHR12 Homeotic gene regulator (.1) AT2G25170 113 / 2e-25 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT5G19310 112 / 4e-25 Homeotic gene regulator (.1) AT5G18620 107 / 1e-23 CHR17 chromatin remodeling factor17 (.1.2) AT3G57300 105 / 5e-23 ATINO80 INO80 ortholog (.1.2) AT2G28290 105 / 5e-23 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G31900 103 / 2e-22 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006642 [exp] 1141 / 0 AT1G48310 834 / 0.0 chromatin remodeling factor18 (.1) Lus10003469 [exp] 255 / 5e-72 AT5G07810 1276 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Lus10005339 [exp] 125 / 4e-29 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 122 / 3e-28 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10022423 [exp] 119 / 5e-27 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 117 / 1e-26 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10012798 [exp] 113 / 3e-25 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10041735 [exp] 111 / 5e-25 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10031050 [exp] 103 / 4e-22 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G003300 [exp] 862 / 0 AT1G48310 932 / 0.0 chromatin remodeling factor18 (.1) Potri.012G067000 [exp] 247 / 3e-69 AT5G07810 1185 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1) Potri.006G262200 [exp] 132 / 2e-31 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 122 / 3e-28 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.009G047800 [exp] 119 / 4e-27 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.008G195900 [exp] 115 / 4e-26 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G253400 [exp] 113 / 2e-25 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.010G019150 [exp] 113 / 2e-25 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G026700 [exp] 110 / 6e-25 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.019G129900 [exp] 110 / 7e-25 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039409 pacid=23175483 polypeptide=Lus10039409 locus=Lus10039409.g ID=Lus10039409.BGIv1.0 annot-version=v1.0 ATGGAAGACGATGATGAATGGGGTTTAAGCGCTGAAGAACTTGACGCCCTTGAGAGGGATGCTATCCAGAAGATCGCTCAGCAGCGGCAACAAATGTGCG GCGGCTTATGTTCCTCTTCATTTTCTTCCGTCACTCAAAATCAAAACCCACCAAGAAACAGTAAACCCTCCGCCGCTTCTTCATCTTACCCGGGGAAATA TTTGTCTTCTGAACCCCAATTTCCTCTCAACTCCAGCTCCAGTGCATTAAGACTACATCCTGTGCCTCCTTTCCTTCCTTTTGTTTCATGTGGATGCGAA GGTGAAATCTGCACTGGACTACCAAAGCTATCAATCAAGTTCTTGCTCCATGCTAGTGGGTGTATTGCCATTAAATTTCCGTATAACCCGGCAGTGGTTG ACGCTCTGCGCAGGGTTCCTAAAGCCAGTTGGAACGCAAACGAAAGATTATGGATGTTCCCAATAGCTGCATTGCTATCAGTTGAAAAAGCTGTAAGAGA AGTATCTGGTTTCACTGTTGAGGTAGAAAGCTTAGATCCCTTGGTGCGGCGTGCTATTACTTCTGCTTCCGCTGTCCCAGATCTTCTTGTCTTCTTCCAA ATTTTCGCATTCAGGTTTGTGTTGCAACATGGAGGCCGTGCTCTACTTGCAGATGAAATGGGACTTGGGAAGACATTACAATTAGCTTATTCTGAAAAGG AGGAACTTCCTGTCAATGGTTTCCAGGCTATAGCTGTAGCTGCATGCGTTCGTGATTCCTGGCCCGTTCTTATTCTTTCACCTTCCTCCTTGCGTTTGCA TTGGGCTTCAATGATTCAACAATGGCTTGATATCCCTCCATCCGACATAGTACTTGTTATCTCATACAAATTGACATTTCCACAGGTTGTCTTATCTCAA TGGAGTGGGTCTAACAGAGGTGGTTTCTCTCTAGTATCCTCGGCCAAGGATACCATAAATCTTGATGGCTTATTCAATATCATCTCTTATGATCTTGTGC AAAAGTTGCAAAAATCTGTTATGGCTTCAAAGTTTCAGGCAAGTGTAATATTGATTGTGATTGCAGATGAATCTCACTTTTTAAAAAACGCCCAAGCAAA GAGAACAACTGCATCCCTCCCTGTTATAAAGAATGCAAAATATGCAATATTGCTTAGTGGAACTCCTGCATTGTCCAGGCCTATAGAACTGTTCAAGCAG CTTGAAGCGTTGTATCCTGATGTATACAAGAACGTTCATGAGTATGGAAATCGTTATTGTAAGGGGGGAGTGTTTGGAGCTTATCAAGGTGCCAGCAACC ATGAAGAACTGCACAACTTGATGAAGACGACTATGATGATTCGCAGACTTAAAAAAGATGTCCTGTCTGAGCTTCCTCAGAAGCGTCGGCAGCAGGTCTT CCTGGAATTGGCTGAAAAGGACATGAAAAATATCAATGCATTGTTTCGTGAGATATATACAGATTCTGCTGAAGCGAAGGTTCCTGCCGTTGTGGACTAT TTGGCTACTGTAGTTGAGGCAGGCTGCAAGTTTCTTGTATTTGCTCACCATCGGCAAATGATCGATTCAGTTCATGAGTATTTGCTTAAGAGGAAAGTAG GTTGCATTCGAATTGATGGTGGTACCCCGTCTGCTGATAGGCAAGCTCTTGTAACTGATTTCCAGGAGAATGATTCTATTAAAGCTGCAGTTCTATCCAT CAAAGCTGGGGGTGTTGGATTAACGCTAACAGCTGCAAGCACTGTAATTTTTGCTGAATTGGCCTGGACTCCTGGGGACTTGATTCAAGCTGAAGATCGG GTTCATAGGATCGGCCAGGTTTCTTCAGTCAATATATATTACCTTCTTGCAAATGATACCGTTGATGATATTATATGGGATGTCGTCCAGAGCAAGTTAG AAAATTTGGGACAGGTGGTTGCTCTCTCTTTCTTTCATTTTTCCATGTTGGTTTGTTTGCTTTGGTGCATGCGGTTTTTCAAGGATGTGGTCACCATTTT GAATCAGATGCTGAATGGACATGAGGATACGTTGGAGGTTTCAAGGGATGAGAATCAGCTAATGGTTGACGCCAGTAACAGGCACAACACCAAGCCGATG AGAAAGCAGGAAATGCTCGACCGCTTTTTGAAGCGATGTAGGAACACGGTAGATGACGAGGAAGAAGAGCAGCAGCAGCAGTCTAAGCTCAAATTTCCCA GGCACTGA
AA sequence Show only first row Show all	>Lus10039409 pacid=23175483 polypeptide=Lus10039409 locus=Lus10039409.g ID=Lus10039409.BGIv1.0 annot-version=v1.0 MEDDDEWGLSAEELDALERDAIQKIAQQRQQMCGGLCSSSFSSVTQNQNPPRNSKPSAASSSYPGKYLSSEPQFPLNSSSSALRLHPVPPFLPFVSCGCE GEICTGLPKLSIKFLLHASGCIAIKFPYNPAVVDALRRVPKASWNANERLWMFPIAALLSVEKAVREVSGFTVEVESLDPLVRRAITSASAVPDLLVFFQ IFAFRFVLQHGGRALLADEMGLGKTLQLAYSEKEELPVNGFQAIAVAACVRDSWPVLILSPSSLRLHWASMIQQWLDIPPSDIVLVISYKLTFPQVVLSQ WSGSNRGGFSLVSSAKDTINLDGLFNIISYDLVQKLQKSVMASKFQASVILIVIADESHFLKNAQAKRTTASLPVIKNAKYAILLSGTPALSRPIELFKQ LEALYPDVYKNVHEYGNRYCKGGVFGAYQGASNHEELHNLMKTTMMIRRLKKDVLSELPQKRRQQVFLELAEKDMKNINALFREIYTDSAEAKVPAVVDY LATVVEAGCKFLVFAHHRQMIDSVHEYLLKRKVGCIRIDGGTPSADRQALVTDFQENDSIKAAVLSIKAGGVGLTLTAASTVIFAELAWTPGDLIQAEDR VHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQVVALSFFHFSMLVCLLWCMRFFKDVVTILNQMLNGHEDTLEVSRDENQLMVDASNRHNTKPM RKQEMLDRFLKRCRNTVDDEEEEQQQQSKLKFPRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	0	1
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	4.6	0.8097
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	5.7	0.7966
AT3G13690			Protein kinase protein with ad...		Lus10006148 [exp]	6.2	0.7857
AT5G15700			DNA/RNA polymerases superfamil...		Lus10005097 [exp]	8.7	0.8097
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	9.3	0.7472
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	9.9	0.8045
AT1G20720			RAD3-like DNA-binding helicase...		Lus10012249 [exp]	10.1	0.8053
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10038352 [exp]	12.0	0.7992
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	16.2	0.8367
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	16.3	0.7469

Compare expression of checked genes

Lus10039409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.