Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10710 1273 / 0 SPT16 global transcription factor C (.1) AT4G10670 502 / 8e-171 GTC2 GTC2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039490 [exp] 872 / 0 AT4G10710 801 / 0.0 global transcription factor C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G004500 [exp] 1349 / 0 AT4G10710 1521 / 0.0 global transcription factor C (.1) Potri.005G005000 [exp] 1317 / 0 AT4G10710 1535 / 0.0 global transcription factor C (.1) Potri.013G004600 [exp] 1301 / 0 AT4G10710 1460 / 0.0 global transcription factor C (.1) Potri.005G005300 [exp] 1264 / 0 AT4G10710 1381 / 0.0 global transcription factor C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF08644 [flax] [poplar] SPT16 FACT complex subunit (SPT16/CDC68) CL0266 [flax] [poplar] PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24 CL0266 [flax] [poplar] PH PF08512 [flax] [poplar] Rtt106 Histone chaperone Rttp106-like
Representative CDS sequence Show only first row Show all	>Lus10039410 pacid=23175714 polypeptide=Lus10039410 locus=Lus10039410.g ID=Lus10039410.BGIv1.0 annot-version=v1.0 ATGGCTGATCACCGTAAAGTGCAATCGCAGTCTCAGACCGGTAAGAAAAAGTCCGTTCTGCTGGAGCCTGTGAAAAGACCAGCTAAAGATGCAATTGGTG TTGATGTCGTTATGCATGTGAAGATGAAGAATGATGATGGTGGGTCGCTTATGGATTCAATTATTTGTGATATTCATGCCATACCAAAGGGTGATTCTGG TGGCCCTCCTGTTGTTGGACATATTGCAAGAGAAGCTCCAGAAGGGAAGCTTTTGGAGACCTGGAGTCAGAAACTGGGTAGTGATGGTTTTCAGCTTGTT GACATATCAGTTGGGTTATCTGACTTGTTCGCTGTTAAGGACAATGACGAGCTTATGTGTATCAAGAAGGCTGCTTTTTTGTCTGCTAATGTGATGAAGA AAGTCGTGGTTCCTAAACTTGAAAATGTAATTGACGAGGAGAAGAAAGTGGCTCATTCAAACCTTATGGATGAGACTGAGAAGGCCATATTGGAGCCTAC AAAGGCTGGTGTGAAGCTCAAGGCTGAGAATGTTGATATTTGCTACCCTCCAATATTTCAGAGTGGTGGGGTATTTGATCTTAGGCCTAGTGCGGCAAGC AATGATGACCTGTTATACTATGATTCTGCCAGTGTAATAATTTGTGCCATTGGATCTCGCTACAACAGTTACTGCTCAAATGTTGCCAGGTCTTTCTTGA TTGATGCCAATTCTCTTCAAAGTAAAGCCTATGAGACCCTTCTCAAGGCACATGAAGCTGCTATCAATGCCTTAAAACCAGGTAACCCAGTTAGTGCAGC ATATGAGGCTGCCCGTTCCTTAATTAAGTCAGAAGCTTCTGAGTTGGTTACACATATGACAAAATCTGCTGGGACTGGTATTGGTCTTGAATTTCGAGAG TCGGGGTTGGCTTTAAATGAAAGGAATGACCGCATGGTGAAAGCTGGGATGGTATTTAATGTATCTCTTGGTTTCCAGAACCTGCAAATCAAGTCCAATA ATCCTAAGAACCAGAATTTCTCGTTGCTGCTTGCTGATACAGTTGTTGTTGGTGCTGAAAAGATTGAAGTTGTAACTCAAGCAAGTTCGAAAGCTGTTAA AGATGTTGCATATTCGTTTAATGATGACGAAGAAGAAGAGGAGAAGCCAAAACCAAAGGTCGAGACTAATGGGAGGGAGCCTCAGGTCACTAAGACGACA CTGAGGTCTGACAATCATGAGGTTTCAAAAGAGGAAGCTCGGAGGCTGCATCAAGCTGAACTAGCTCAAAAGAAGAATGAGGAAACTGCTAGGCGTCTTG CTGGTGGTGGACCTGGATCAGGAGATAATCGTGGTTCTGGGAAAGCTTCTACTGACTTGGTTGCCTACAAGACGGTGAATGATCTGCCACCTCCAAGAGA TTTAATGATTCAGGTTGACCAGAAGAATGAAGCTGTTCTCATACCAGTATATGGTAGTATGGTTCCTTTCCATGTGGCGACCATAAGGACTGTGTCGAGC CAGCAGGATACGAACAGGAACTGTTATATCAGGATAATCTTCAATTTCCCCGGGACCCCGTTTAGCCAACAAGATGCGAACTCTGTGAAATACCCAGGGG CTATTTATCTGAAGGAGGTTTCATTCAGGTCGAAGGATCCAAGGCACATTAGCGAGGTAGTACAGCAAATTAAAACTCTTCGCCGGCTTGTGATGACTAG GGAGTCTGAGAGAGCGGAAAGGGCAACCTTGGTCACCCAAGAAAAGTTGCAACTGGCTGGTAACAGGTCTAAGCCTATTAGATTGTCTGATCTTTGGATT CGCCCTGTCTTTGGTGGGCGTGGAAGGAAGCTACCTGGGACACTTGAAGCTCATGTCAATGGGTTTCGCTACTCAACTACAAGGCAAGATGAGCGAGTTG ATGTTATGTTTTCTAACATCAAACATGCCATTTTTCAGCCTGCAGAAAATGAGATGATCACTCTCATTCACTTCCATCTGCACAACCATATTATGGTTGG TAATAAAAAGACTAAGGATGTCCAATTTTATGTGGAGGTCATGGATCAGGTGCAAACTATTGGAGGTGGGAGGAGATCTGCGTATGACCCTGATGAGATT GAAGAAGAACAGCGGGAAAGAGACAAGAAGTACAAAATTAACAGCGAGTATCTCAACTTTGTGAAACGGGTAAACGATCTTTGGGAGCAACCTCAGTTTA GAGATCTGGACCTTGACTTTGATCAGCCTTTAAGAGAGCTTGGTTTCCATGGGGTGCCATACAAGTCATCTGCTTTCATCATCCCAACTTCATCTTGCCT TGTCGAGTTGATTGAGACACCTTTCCTGGTTGTCACACTTGGGGAGATAGAGATTGTGAATCTTGAGAGGGTTGGCCTTGGGCAGAAAAACTTCGACATG ACTATTGTGTTCAAGGACTTCAAGAAGGATGTGCTGCGAATTGATTCAATCCCTTCAACTGCACTTGATGGCATTAAGGAATGGTTGAACACGACTGATA TCAAGTATTACGAGAGCAGGCTGAACTTGAATTGGCGACAAATATTGAAGACAATTACTGATGATCCTCAGAGCTTCATAGACGATGGTGGTTGGGAGTT TCTGAACTTGGAAGCTACTGATTCGGAGTCTGATGGTTCAGAGGAGTCTGATCAGGGGTATCAGCCATCAGGATCGGAGCCGGAGTCTGTCTCGGAAGAA GAGGATTCTGACAGCGCATCGTTGGTGGAATCTGAAGATGAAGAGGAAGAGGACTCGGAAGCTGACTCTGAGGAAGAGAAGGGAAAGACATGGGAAGAGT TGGAGAGAGAAGCAAGTAATGCAGACAGAGAGAAGGGCGATGAGTCGGACAGTGAGGAAGAGAGGAAGCGAAGGAAGGCTAAGGCTTTCGGCGGGAGGCC GCGTCCTGGCCCTCCTCCCAGTGCTGCGAAGCGGACGAAGTTGAGATGA
AA sequence Show only first row Show all	>Lus10039410 pacid=23175714 polypeptide=Lus10039410 locus=Lus10039410.g ID=Lus10039410.BGIv1.0 annot-version=v1.0 MADHRKVQSQSQTGKKKSVLLEPVKRPAKDAIGVDVVMHVKMKNDDGGSLMDSIICDIHAIPKGDSGGPPVVGHIAREAPEGKLLETWSQKLGSDGFQLV DISVGLSDLFAVKDNDELMCIKKAAFLSANVMKKVVVPKLENVIDEEKKVAHSNLMDETEKAILEPTKAGVKLKAENVDICYPPIFQSGGVFDLRPSAAS NDDLLYYDSASVIICAIGSRYNSYCSNVARSFLIDANSLQSKAYETLLKAHEAAINALKPGNPVSAAYEAARSLIKSEASELVTHMTKSAGTGIGLEFRE SGLALNERNDRMVKAGMVFNVSLGFQNLQIKSNNPKNQNFSLLLADTVVVGAEKIEVVTQASSKAVKDVAYSFNDDEEEEEKPKPKVETNGREPQVTKTT LRSDNHEVSKEEARRLHQAELAQKKNEETARRLAGGGPGSGDNRGSGKASTDLVAYKTVNDLPPPRDLMIQVDQKNEAVLIPVYGSMVPFHVATIRTVSS QQDTNRNCYIRIIFNFPGTPFSQQDANSVKYPGAIYLKEVSFRSKDPRHISEVVQQIKTLRRLVMTRESERAERATLVTQEKLQLAGNRSKPIRLSDLWI RPVFGGRGRKLPGTLEAHVNGFRYSTTRQDERVDVMFSNIKHAIFQPAENEMITLIHFHLHNHIMVGNKKTKDVQFYVEVMDQVQTIGGGRRSAYDPDEI EEEQRERDKKYKINSEYLNFVKRVNDLWEQPQFRDLDLDFDQPLRELGFHGVPYKSSAFIIPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDM TIVFKDFKKDVLRIDSIPSTALDGIKEWLNTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLEATDSESDGSEESDQGYQPSGSEPESVSEE EDSDSASLVESEDEEEEDSEADSEEEKGKTWEELEREASNADREKGDESDSEEERKRRKAKAFGGRPRPGPPPSAAKRTKLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10710		SPT16	global transcription factor C ...		Lus10039410 [exp]	0	1
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10014524 [exp]	3.5	0.9300
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	5.0	0.9361
AT3G42170			BED zinc finger ;hAT family di...		Lus10032337 [exp]	5.5	0.9344
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10013735 [exp]	6.3	0.9078
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	7.7	0.9298
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	10.4	0.9104
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	11.0	0.9153
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	13.4	0.9143
AT5G07900			Mitochondrial transcription te...		Lus10036450 [exp]	13.9	0.8890
AT5G45400		ATRPA70C	Replication factor-A protein 1...		Lus10023805 [exp]	17.2	0.8722

Compare expression of checked genes

Lus10039410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.