Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04230 202 / 2e-62 Protein of unknown function (DUF2361) (.1) AT5G43720 174 / 2e-51 Protein of unknown function (DUF2361) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039489 [exp] 377 / 3e-130 AT1G04230 327 / 4e-111 Protein of unknown function (DUF2361) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160800 [exp] 262 / 2e-85 AT1G04230 185 / 6e-56 Protein of unknown function (DUF2361) (.1) Potri.010G078500 [exp] 245 / 6e-79 AT1G04230 230 / 3e-73 Protein of unknown function (DUF2361) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10153 [flax] [poplar] Efg1 rRNA-processing protein Efg1
Representative CDS sequence Show only first row Show all	>Lus10039411 pacid=23175494 polypeptide=Lus10039411 locus=Lus10039411.g ID=Lus10039411.BGIv1.0 annot-version=v1.0 ATGGCCCACGGTGGCTATGGCAAGCGCAGTGTCGCCGGCCGCCAACCTTCCGTCGGGCGCCGGTCCAAGCCAATCGACAAGAAAGCGAAATCCAAACCCA TCACCTACCAGATTCGTTCTGTGGTGCGCATGCTCCGTAGGGAACTAACGCCGGAAGTAAGAGAGGCTCAAGAGAAGAAGTTAGAAGGGTTGAAGAAGGA GCAGGAACTCCACACTCGCTTGGCTCTTGAACGCACAATATTCTTGCGAGATAAGAAGATTAAATTCTTTGAAAGGAGGAAGATAGAACGAAGAATCAGA CGCCTGGAGAAACAACAGCGTACTTCATCCGGCCAGGCACAAGATGCCGAGGCTGCTGCCCAACTTTCCAAGTTGAAAGAAGATCTCGAATACGTTAGAT TTTTCCCCAAGACAGAAAAGTATGTCTCTTTGCTTTCTGGCGGAGACGATACAGAGTTAGTTGATAAGAGAAATAGATTGCGCAAGCAGATTAAAGCCAA CCTAAGTGCTGCTGCTGCCAGTGGCAAAGATTTGGAAGAGACAGGGAGTGAAGATGATGGGCTTTTGGATCTCAGTGAGGATGACTTCTTCCTAGCAGGA AGCTCTAGCGATGAAGCAGATGCAGATGATGAGTGGACAGACAAAAGCACAAAAGAACAGGCGTCAAGTACTTCTGGTAAAGCAGCATCTGGTATGTCAA GCGATGAAAAGAATCAGAGGCAGATCTCAGCAAGAGCTCTGATGCCTCCTCCTCGGCCTTCAAACAATGCAAGTGCCAACTCAGTACGTGGGCGATCAAG GTTTGGAGCATCGTCTAGTACTAACACAGGGAGACAGAGGGCTGAAACATCTACTTCCAGCAATACTTCAAGCAGCAGAAGTGGCTCCTCTTTTAAAGTT GGCATTTCTTTAAATGCAAGGGCTGGCAATAGCAGTAATGTAAGTTCTGGCTCTGATGCTCAAAAGCCACGCAGGAAGAGGAAGAGAAGAAAGAAGCAAC AGGTACGACACCTTGTTTTCCATCCTGCTTTGTTGGTACTTTATTTCGGGATAGTATAG
AA sequence Show only first row Show all	>Lus10039411 pacid=23175494 polypeptide=Lus10039411 locus=Lus10039411.g ID=Lus10039411.BGIv1.0 annot-version=v1.0 MAHGGYGKRSVAGRQPSVGRRSKPIDKKAKSKPITYQIRSVVRMLRRELTPEVREAQEKKLEGLKKEQELHTRLALERTIFLRDKKIKFFERRKIERRIR RLEKQQRTSSGQAQDAEAAAQLSKLKEDLEYVRFFPKTEKYVSLLSGGDDTELVDKRNRLRKQIKANLSAAAASGKDLEETGSEDDGLLDLSEDDFFLAG SSSDEADADDEWTDKSTKEQASSTSGKAASGMSSDEKNQRQISARALMPPPRPSNNASANSVRGRSRFGASSSTNTGRQRAETSTSSNTSSSRSGSSFKV GISLNARAGNSSNVSSGSDAQKPRRKRKRRKKQQVRHLVFHPALLVLYFGIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04230			Protein of unknown function (D...		Lus10039411 [exp]	0	1
AT5G06590			unknown protein		Lus10021091 [exp]	3.5	0.8775
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	11.3	0.8435
AT3G04560			unknown protein		Lus10022011 [exp]	14.2	0.8307
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041465 [exp]	16.9	0.8025
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	19.7	0.8361
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	19.7	0.8430
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10027993 [exp]	19.8	0.8015
AT1G67890			PAS domain-containing protein ...		Lus10016912 [exp]	20.2	0.8423
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	27.5	0.8051
AT3G55550			Concanavalin A-like lectin pro...		Lus10024365 [exp]	29.2	0.7970

Compare expression of checked genes

Lus10039411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.