Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14550 305 / 1e-105 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G23050 301 / 7e-104 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 296 / 7e-102 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT3G04730 271 / 5e-92 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT5G65670 212 / 2e-67 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT4G29080 210 / 3e-67 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT2G22670 200 / 5e-63 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT5G43700 160 / 5e-49 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 156 / 2e-47 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 148 / 1e-44 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039487 [exp] 391 / 3e-139 AT4G14550 232 / 5e-77 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10015907 [exp] 276 / 2e-93 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10006585 [exp] 226 / 1e-73 AT3G04730 254 / 3e-85 indoleacetic acid-induced protein 16 (.1) Lus10034962 [exp] 219 / 2e-70 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10019241 [exp] 208 / 4e-66 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10012984 [exp] 207 / 1e-65 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10011583 [exp] 202 / 3e-64 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10028222 [exp] 197 / 2e-62 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10014731 [exp] 197 / 2e-62 AT3G04730 241 / 4e-80 indoleacetic acid-induced protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161200 [exp] 335 / 3e-117 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 318 / 1e-109 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.013G041400 [exp] 295 / 2e-101 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.005G053900 [exp] 290 / 3e-99 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 276 / 8e-94 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 274 / 3e-93 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.003G051300 [exp] 211 / 6e-67 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G177400 [exp] 205 / 3e-66 AT3G04730 211 / 8e-69 indoleacetic acid-induced protein 16 (.1) Potri.002G108000 [exp] 209 / 5e-66 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.001G186100 [exp] 201 / 4e-63 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10039414 pacid=23175720 polypeptide=Lus10039414 locus=Lus10039414.g ID=Lus10039414.BGIv1.0 annot-version=v1.0 ATGACGAGCTGCGATTTGAACCTAAAAGCCACGGAGCTCTGTCTCGGCCTCCCTGGCGCTGTAGGCAAAGTTGAGACGATGCTGGAGAACACGGCGCCTC CTCCTAATCCGAAGGTGACTGGAAAAAGAGGCTTCTCCGAGACGGTTGATCTCAAGCTCAATCTGCATTCCAACAACCTCGTCGACGCCGGCGCTGTTGA TGATCATCATCAGCATAACCCAAATAATAATATTAATGCCCAAAAGAACTCATCCGATGCTCCCATCAATGACCCCGCCAAGCCACCCGCCAAAGCGCAA GTGGTGGGATGGCCACCAGTGAGGTCGTACAGGAAGAACGTGATGGCAGTAGTACAGAAGAGCAGCCGCGGCGATGAAGAGAATAATAATGGAAAGAGCA GCACGGTGGGGGCATTTGTAAAGGTGTGCATGGACGGAGCACCCTACCTTCGGAAAGTGGACTTGAACATGTACACCAGCTACCACCAGCTCTCTCTTTC CCTCGCCAATAAGTTCTCCTCCTTCACTATGGGTAATATTGGAGAGCAAGGAATGATAGACTTCATGAACGAGAGGAAGCTGATGGATGTGCTCAACAGC TCAGAATATGTGCCAACCTATGAGGATAAGGATGGGGACTGGATGCTTGTGGGCGATGTTCCCTGGGAGATGTTCGTAAATTCATGCAAGCGCCTGCGAA TCATGAAAGGATCTGAAGCTATTGGACTTGCACCAAGAGCGATGGAAAAATGCAAGAGCAGAGCTTGGTGA
AA sequence Show only first row Show all	>Lus10039414 pacid=23175720 polypeptide=Lus10039414 locus=Lus10039414.g ID=Lus10039414.BGIv1.0 annot-version=v1.0 MTSCDLNLKATELCLGLPGAVGKVETMLENTAPPPNPKVTGKRGFSETVDLKLNLHSNNLVDAGAVDDHHQHNPNNNINAQKNSSDAPINDPAKPPAKAQ VVGWPPVRSYRKNVMAVVQKSSRGDEENNNGKSSTVGAFVKVCMDGAPYLRKVDLNMYTSYHQLSLSLANKFSSFTMGNIGEQGMIDFMNERKLMDVLNS SEYVPTYEDKDGDWMLVGDVPWEMFVNSCKRLRIMKGSEAIGLAPRAMEKCKSRAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039414 [exp]	0	1
AT2G42900			Plant basic secretory protein ...		Lus10031462 [exp]	1.0	0.9140
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	1.4	0.9112
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	2.0	0.8906
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	2.2	0.8905
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	6.5	0.8501
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	6.5	0.8939
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	12.5	0.8823
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	13.4	0.8471
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	14.7	0.8599
					Lus10041110 [exp]	15.5	0.8585

Compare expression of checked genes

Lus10039414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.