Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14870 940 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 803 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G24610 803 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 801 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G28260 705 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT4G30560 644 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 638 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT5G57940 629 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G01340 625 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT5G53130 619 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039486 [exp] 1318 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10023203 [exp] 815 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10002363 [exp] 814 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10015510 [exp] 812 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 803 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042132 [exp] 796 / 0 AT3G48010 902 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10042434 [exp] 776 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 751 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 726 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G108200 [exp] 967 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.017G067000 [exp] 846 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.018G097600 [exp] 826 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 773 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.009G010700 [exp] 686 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 653 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 624 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 618 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.003G183000 [exp] 607 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 600 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039415 pacid=23175506 polypeptide=Lus10039415 locus=Lus10039415.g ID=Lus10039415.BGIv1.0 annot-version=v1.0 ATGTCGTCGGTGATGATGAATCAACTCGCTTACTACCCGTCCTCCAAATTCCGCCGCCGATTCCAACGCCTCCAGTACCGCCTCCCTACCGCCATCATCA ACACGATCGCCGCCATCTCCTCCCCACCCAATGGCGAACCCCATCCTCTCCTCATTCTATGGCGTTACCAAATCCTCGACCCGGACAGCGACATTGTCAT CTACTGGAACCACGTCTTCCTCCTCACCTCCATCGTTGCCCTCTTCATCGACCCTCTCTATTTCTTCTTGCCTTACGTTGTCGCCGACAATGTCTGCTTC TCCATTGACCACCACCTTGCCGTCGTCATCACCTCCTACCGAACCCTAGCTGACTTGTTCTTCATCCTTCACATTGTTCTCAAATTTCGCACAGCCTTCG TAGCTCCCAATACTAGGGTTTTCGGCCGAGGGGAGCTCGTCATGGATCCCAAGGAGATTGCTCAGCGTTATCTGAGGGCGGATTTCGTTATTGGCGTTGC TGCCGCGCTGCCCCTCCCTCAGATTGTGATATGGTTAGTAGTTCCGGTGGTGAGACAGTACAGAGCTGATGATGCCAACAATACACTCTCCCTCATTGTT CTTCTTCAATACATTCCGAGAATGTTTGTCATCTTCCCTCTGCATCAACGTATTGTAAAAACTACTGGCTTCATCGTTAAGACTGCATGGGCAGGAGCCG CTTACAATCTCATCCTTTTCATGCTTGCCAGTCATGTATTGGGAGCTACTTGGTATTTGTTGTCGTTCGGCAGACAGTTCTACTGTTGGAAAACGGCTTG TTCAAGGGAGAACAATGAAGGAAACATAGGGTGTGTCTACGCATTTTTGGACTGCAAATCCATGGGAATGCCTGAGAGGCAATACTGGCGGAATGTGACC CATGTCCCTACCTCTTGTGACCCTCTTAACAGTAACATCGGATTTGCATTTGGGATCTTTGCTGAAGCTTTTACTAGTGAGGTTGCTTCCTCGCCGTTCG TTGAGAAGTACTTGTATTGCCTCTGGTGGGGCTTAAAAAATTTAAGCTCATATGCACAGAATCTAGAGACGAGCATCTTTATCGGAGAGAATGTGTTCTG TATTGTCACTTGTATCGTTGGTTTAGTCCTTTCTGCACAACTGATTGGCAATATGCAGACTAATCTGCAATCAATATCGGTGAGACTGGAAGAGTGGAGA ATCAAGCGAAGAGATACAGAGGAATGGATGAGGCACCGACAATTGCCTCCCGCTCTTCAAGAACGAGTCCGTCGGTTTGTCCAGTACAAATGGCTTGCCA CCAGAGGAGTCCATGAAGAGTCAATTTTGTGGTCATTGCCTCAGGACCTCCGTCGAGAAATCCAGCGCCACCTTTGCCTCTCCCTCGTCCGCCGTGTGCC TTTCTTCTCCCAAATGGATGACCAGCTCCTGGATGCAATCTGCGAGCGTCTATTTTCGTCCCTGAGCACGGATGGAACGTACATTGTCCGAGAAGGCGAC CCAGTAAACGAGATGCTATTTATAATAAGAGGGCAGTTAGAGAGCTCCACAACTAATGGAGGAAGGACAGGATTCTTCAACTCGATCACTCTTCGGCCTG GCGATTTTTGTGGTGAAGAGCTTCTTACGTGGGCATTGATGCCCAACTCTACTCATAGCTTCCCCTCCTCCACCCGAACTGTGAAGGCCCTCACCGAAGT GGAAGCCTTCTCCCTTCAGGCAGAGGACCTGAAATTCGTTGCTCTACAATTCAAGAGACTGCAGAGCAAAAAACTTCAGCATGCTTTCAGGTACTACTCT CACCAGTGGCGGACTTGGGGTGCTTGTTTGATCCAGTCCGTTTGGAGAAGGTTCAAGAAACGGAAGTTGAGCAAGGAGCTGACGACGAGGGAGCGCCAAG CTGGGTATGTGCCCATCATGGAAGCGGACTACTACTACTACAGCGACGAGGATGATGAGGATTTCGAGGACGACGATGATGATGATGATGATGACGACGA CATGTACATGGATGAAAATGGGGAGAGGACAGGGAATCAAAAAGGGCTCGGAGCTACGATGCTGGCTTCAAGGTTTGCTGCTAATACTAGGAAGCAGAAG GGTCATGGGGTTGAAACAGGGACTTCTTCCAGCCTGAAAATGCCACAATTGTTCAAGCCTGATGAGCCTAACTTTTATGCCGACCATGATGTTTAG
AA sequence Show only first row Show all	>Lus10039415 pacid=23175506 polypeptide=Lus10039415 locus=Lus10039415.g ID=Lus10039415.BGIv1.0 annot-version=v1.0 MSSVMMNQLAYYPSSKFRRRFQRLQYRLPTAIINTIAAISSPPNGEPHPLLILWRYQILDPDSDIVIYWNHVFLLTSIVALFIDPLYFFLPYVVADNVCF SIDHHLAVVITSYRTLADLFFILHIVLKFRTAFVAPNTRVFGRGELVMDPKEIAQRYLRADFVIGVAAALPLPQIVIWLVVPVVRQYRADDANNTLSLIV LLQYIPRMFVIFPLHQRIVKTTGFIVKTAWAGAAYNLILFMLASHVLGATWYLLSFGRQFYCWKTACSRENNEGNIGCVYAFLDCKSMGMPERQYWRNVT HVPTSCDPLNSNIGFAFGIFAEAFTSEVASSPFVEKYLYCLWWGLKNLSSYAQNLETSIFIGENVFCIVTCIVGLVLSAQLIGNMQTNLQSISVRLEEWR IKRRDTEEWMRHRQLPPALQERVRRFVQYKWLATRGVHEESILWSLPQDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICERLFSSLSTDGTYIVREGD PVNEMLFIIRGQLESSTTNGGRTGFFNSITLRPGDFCGEELLTWALMPNSTHSFPSSTRTVKALTEVEAFSLQAEDLKFVALQFKRLQSKKLQHAFRYYS HQWRTWGACLIQSVWRRFKKRKLSKELTTRERQAGYVPIMEADYYYYSDEDDEDFEDDDDDDDDDDDMYMDENGERTGNQKGLGATMLASRFAANTRKQK GHGVETGTSSSLKMPQLFKPDEPNFYADHDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	0	1
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	1.4	0.9317
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	1.7	0.9276
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	2.0	0.9311
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10000746 [exp]	3.2	0.7766
					Lus10019456 [exp]	4.5	0.8291
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	5.7	0.7978
					Lus10040545 [exp]	5.9	0.7996
AT4G10260			pfkB-like carbohydrate kinase ...		Lus10040562 [exp]	6.7	0.7298
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	6.7	0.8264
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	7.2	0.7550

Compare expression of checked genes

Lus10039415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.