Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70310 492 / 1e-176 SPDS2 spermidine synthase 2 (.1) AT1G23820 492 / 3e-176 SPDS1 spermidine synthase 1 (.1.2) AT5G53120 403 / 3e-141 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6) AT5G19530 129 / 1e-34 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029169 [exp] 502 / 1e-180 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10030629 [exp] 491 / 1e-176 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10012996 [exp] 486 / 1e-173 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2) Lus10030861 [exp] 474 / 1e-169 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10019016 [exp] 416 / 3e-146 AT5G53120 571 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10003398 [exp] 410 / 1e-143 AT5G53120 563 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10018259 [exp] 336 / 9e-116 AT1G23820 374 / 6e-130 spermidine synthase 1 (.1.2) Lus10040649 [exp] 160 / 7e-48 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2) Lus10033437 [exp] 128 / 4e-34 AT5G19530 410 / 1e-143 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094600 [exp] 497 / 9e-179 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 491 / 2e-176 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 417 / 7e-147 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 395 / 5e-138 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.010G089200 [exp] 125 / 4e-33 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 123 / 1e-32 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 116 / 5e-30 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10039416 pacid=23175576 polypeptide=Lus10039416 locus=Lus10039416.g ID=Lus10039416.BGIv1.0 annot-version=v1.0 ATGGCCGACCACCCAAATGATCCCGCCGCCGTTGATGTTGTGTCAGACAGTATTCCAGGGCTTTCAGCTATAATTCCTGGGTGGTTCTCCGAGATCAATC CTTTGTGGCCAGGAGAGGCTCATTCATTGAAGGTGGACAAAGTTTTGTTTCAAGGGAAATCGGAATACCAAAATGTTGTCGTGCTCCAGTCTGCAACGTA CGGAAAGGTTCTTGTATTGGATGGGGTGATTCAACTTACAGAAAGAGATGAGTGTGCATACCAAGAGATGATTGCCCATCTCCCACTATGCTCCATACAA ACCCCTAAAAAGGTGTTGGTTATCGGAGGTGGTGATGGAGGGGTTATTCGTGAAGTTTCTCGCCACTCCTCTGTTCAACAGATTGATATGTGTGAAATTG ATGCCATGGTGGTTGATGTTTCCAAGAAGTATTTCCCTGATGTAGCAGTTGGATTTCAAGATCCTCGTGTCAATCTCCATATTGGTGATGGAGTTGCTTT CCTAAAGGCTGTTCCACATGGTACTTACGATGCTGTCATAGTAGATTCCTCCGATCCAATTGGGCCTGCAAAAGAGCTGTTTGAGAAACCTTTCTTTGAG TTGATTGCCAAGGCTCTTCGCCCTGGCGGTGTGGTTTGTACACAAGCAGAGAGCTTGTGGCTCCACATGCATCTCATACAAGACATCGTTTCAAACTGTC GCGAAATCTTCAAGGGTTCTGTCAACTATGCCTGGACTACGGTTCCTACATATCCTAGTGGAATGATTGGCTTCATGCTTTGCTCTACTGAGGGACCAAC AGTCGACTTCAAGAATCCGGCGACTCGAGTTGAAGCTTATGGTAGTAACACCCGAGTTAAAGGGCCATTAACATTCTACAATGCTGAGATTCATGCTGCA GCTTTCTGTTTGCCATCATTTGTGAAGAAAGCAATTGGATCAAAGCTCAACTGA
AA sequence Show only first row Show all	>Lus10039416 pacid=23175576 polypeptide=Lus10039416 locus=Lus10039416.g ID=Lus10039416.BGIv1.0 annot-version=v1.0 MADHPNDPAAVDVVSDSIPGLSAIIPGWFSEINPLWPGEAHSLKVDKVLFQGKSEYQNVVVLQSATYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIQ TPKKVLVIGGGDGGVIREVSRHSSVQQIDMCEIDAMVVDVSKKYFPDVAVGFQDPRVNLHIGDGVAFLKAVPHGTYDAVIVDSSDPIGPAKELFEKPFFE LIAKALRPGGVVCTQAESLWLHMHLIQDIVSNCREIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPTVDFKNPATRVEAYGSNTRVKGPLTFYNAEIHAA AFCLPSFVKKAIGSKLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10039416 [exp]	0	1
					Lus10012705 [exp]	3.9	0.9452
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003147 [exp]	7.0	0.9529
AT1G13550			Protein of unknown function (D...		Lus10031914 [exp]	14.1	0.9219
AT5G10530			Concanavalin A-like lectin pro...		Lus10033781 [exp]	14.8	0.9442
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10029395 [exp]	15.2	0.9430
AT4G35160			O-methyltransferase family pro...		Lus10006692 [exp]	15.3	0.9385
AT4G23690			Disease resistance-responsive ...		Lus10032331 [exp]	18.3	0.9480
AT4G35030			Protein kinase superfamily pro...		Lus10017273 [exp]	27.4	0.9356
					Lus10022008 [exp]	27.9	0.9346
AT1G20030			Pathogenesis-related thaumatin...		Lus10004410 [exp]	28.8	0.9159

Compare expression of checked genes

Lus10039416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.