Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019378 [exp] 42 / 5e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039418 pacid=23175573 polypeptide=Lus10039418 locus=Lus10039418.g ID=Lus10039418.BGIv1.0 annot-version=v1.0 ATGGCCACCCTGCTAGTGGATCGAGGGTCATGGATGATGTCCCCTCTCGTCACGCAATGGCGTCACTTTGATTCTGATACCTTGCAACCTGTTAAAAGTG GGGCTCCTTCTATTCTGCCACCTCTGCCGCCACTGTCATCTCTTGGCTGTTGCTTCGGTGGTCGAGCTCTGACGACTTCCAGATCTTGGGGTTCGAGCAA GATAACGACGGCTTGGTTCCCTCTTTTAAAATTTGCGCTACTGGAAACCCTTTTGGGCCCGCTATTCACCCACCACTCTCTCTTGATGCAGGCTCCTTGC AGAACTGGGCCACACTCCCATGCCGATGTTACCTCCAAAGACTGTGTGCCTCACCTTCACACTGGGTCGCATGCCCAAGCAGACGCCACCTCCAAGGCAC GGCATAACGACTCAGCTGGCACTTGGCTCTTTCATTCTTCTAAGGGTGGGTCAAAGTCTCCTTCGCCTACTGTTGGGCCTATCACGTCGGTCCCTCCCTT GCCACCCTTATAG
AA sequence Show only first row Show all	>Lus10039418 pacid=23175573 polypeptide=Lus10039418 locus=Lus10039418.g ID=Lus10039418.BGIv1.0 annot-version=v1.0 MATLLVDRGSWMMSPLVTQWRHFDSDTLQPVKSGAPSILPPLPPLSSLGCCFGGRALTTSRSWGSSKITTAWFPLLKFALLETLLGPLFTHHSLLMQAPC RTGPHSHADVTSKDCVPHLHTGSHAQADATSKARHNDSAGTWLFHSSKGGSKSPSPTVGPITSVPPLPPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039418 [exp]	0	1
					Lus10000377 [exp]	1.7	0.8535
AT2G27550		ATC	centroradialis (.1)		Lus10015520 [exp]	5.7	0.7610
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	5.8	0.8449
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	11.1	0.8122
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	17.5	0.7688
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	17.7	0.7504
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	19.5	0.7327
					Lus10023005 [exp]	20.9	0.7278
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10014880 [exp]	22.5	0.7294
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	25.5	0.7867

Compare expression of checked genes

Lus10039418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.