Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70280 320 / 3e-107 NHL domain-containing protein (.1.2) AT1G23880 317 / 2e-105 NHL domain-containing protein (.1) AT5G14890 287 / 2e-91 NHL domain-containing protein (.1) AT3G14860 228 / 2e-71 NHL domain-containing protein (.1.2) AT1G23890 159 / 3e-47 NHL domain-containing protein (.1.2) AT1G56500 50 / 1e-06 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039484 [exp] 457 / 2e-160 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10032158 [exp] 379 / 8e-131 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10014529 [exp] 375 / 6e-129 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10029176 [exp] 290 / 7e-95 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10012989 [exp] 279 / 1e-90 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10030850 [exp] 279 / 7e-90 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10030849 [exp] 143 / 9e-40 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030637 [exp] 115 / 2e-29 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2) Lus10030639 [exp] 90 / 2e-20 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092200 [exp] 353 / 8e-120 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 337 / 9e-114 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 335 / 4e-113 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 232 / 3e-72 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 225 / 2e-70 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 144 / 3e-40 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 135 / 8e-37 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.008G122450 [exp] 41 / 6e-05 AT1G23880 49 / 3e-08 NHL domain-containing protein (.1) Potri.013G007800 [exp] 42 / 0.0003 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.009G072933 [exp] 38 / 0.0003 AT1G23880 44 / 7e-07 NHL domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01436 [flax] [poplar] NHL NHL repeat
Representative CDS sequence Show only first row Show all	>Lus10039421 pacid=23175721 polypeptide=Lus10039421 locus=Lus10039421.g ID=Lus10039421.BGIv1.0 annot-version=v1.0 ATGCGCCGGCAATGGGTGGCTTCTGCTCTTATTTGCTTGCTTCTCCTTAACGCCTTTTCTCCTGCTTCAGCAACTACTACTCCTGCAAGAATTGTGGCTG GAGTTATTTCCAATGTGGTTTCCGCACTTGCTAAATGGATATGGTCCCTCAAATCCAACCCCAAAACAGTTTCAAGGCTGAAGGGCCTGATGGGTGTGGA TGGCTCTTCCTCAGCTGTTTCTGGGCGTTCCATGGTCAAATTTGAAGATGGGTATACTGTGGAGACGGTGTTCGATGGGAGTAAGCTTGGGATTGACCCT TTCTCTGTTGAGGTTTCTCCTACTGGTGAGCTCATGATCTTGGATTCACAGAACAGTAACATTTACAAGATCCAAACTCCACTCTCCAAATATAGCAGGC CCAAACTGGTTGCTGGATCACCTGAAGGCTATACTGGCCATGTTGATGGCAAGTTAAGAGAGGCAAGAATGAATCAACCCAAAGGTCTTGCTGCTGACGA CAGAGGAAACATATACATTGCGGACACCATGAACATGGCAATAAGGAAGATTAGTGAGGGAGGAGTTACAACTATTGTAGGTGGAGGAAAATGGAGTCGA GGAGGTGGCCATGTTGATGGGCCAAGTGAAGACTCCAAACTATCTACCGATTTTGATGTGCACTATGTTGGAAGTAGTTGCTCTCTTTTGGTTGTAGACA GAGGGAACCAGGCAATTAGAGAAATCCAACTCCATGACGAGGATTGCGACTATGGAGATGATACCACTTACCCCTTGGCAATTGTAATGCTGGTTGTTGC TGGGTTCTTGGGATACATCGGGTATAGGAAGTCGTTGTATATCATTGTCGACGTGAAGCGGGAATAG
AA sequence Show only first row Show all	>Lus10039421 pacid=23175721 polypeptide=Lus10039421 locus=Lus10039421.g ID=Lus10039421.BGIv1.0 annot-version=v1.0 MRRQWVASALICLLLLNAFSPASATTTPARIVAGVISNVVSALAKWIWSLKSNPKTVSRLKGLMGVDGSSSAVSGRSMVKFEDGYTVETVFDGSKLGIDP FSVEVSPTGELMILDSQNSNIYKIQTPLSKYSRPKLVAGSPEGYTGHVDGKLREARMNQPKGLAADDRGNIYIADTMNMAIRKISEGGVTTIVGGGKWSR GGGHVDGPSEDSKLSTDFDVHYVGSSCSLLVVDRGNQAIREIQLHDEDCDYGDDTTYPLAIVMLVVAGFLGYIGYRKSLYIIVDVKRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	0	1
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	1.4	0.8941
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10016591 [exp]	2.4	0.8884
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	3.2	0.8791
AT2G02910			Protein of unknown function (D...		Lus10036741 [exp]	4.0	0.8806
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10043195 [exp]	4.5	0.8221
AT5G62620			Galactosyltransferase family p...		Lus10036685 [exp]	8.5	0.8556
AT5G52882			P-loop containing nucleoside t...		Lus10027550 [exp]	9.2	0.8292
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	10.6	0.8258
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	10.8	0.8390
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	11.2	0.8594

Compare expression of checked genes

Lus10039421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.