Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68400 280 / 4e-85 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G17840 238 / 1e-69 RLK902 receptor-like kinase 902 (.1) AT3G42880 213 / 2e-60 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 213 / 2e-60 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G02880 210 / 1e-59 Leucine-rich repeat protein kinase family protein (.1) AT3G56100 211 / 2e-59 IMK3, MRLK meristematic receptor-like kinase (.1) AT2G26730 209 / 1e-58 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 199 / 3e-55 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 198 / 5e-55 Leucine-rich repeat protein kinase family protein (.1.2) AT1G64210 191 / 1e-52 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039483 [exp] 847 / 0 AT5G58300 241 / 5e-71 Leucine-rich repeat protein kinase family protein (.1.2) Lus10014525 [exp] 741 / 0 AT2G26730 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10032162 [exp] 739 / 0 AT2G26730 321 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10002360 [exp] 496 / 8e-169 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10042135 [exp] 335 / 5e-106 AT2G26730 335 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10004040 [exp] 265 / 9e-80 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10035138 [exp] 251 / 6e-74 AT1G68400 746 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10021131 [exp] 230 / 4e-66 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 211 / 9e-60 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073500 [exp] 513 / 1e-175 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.012G078100 [exp] 351 / 9e-113 AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 287 / 3e-88 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 253 / 1e-75 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 248 / 6e-73 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 242 / 3e-71 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 221 / 1e-62 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 211 / 1e-59 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 207 / 5e-58 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 204 / 3e-57 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10039422 pacid=23175495 polypeptide=Lus10039422 locus=Lus10039422.g ID=Lus10039422.BGIv1.0 annot-version=v1.0 ATGCGGGCGATTGTCATTTCCCTCTTCCTCATCTCCCTCTACCCTACTGCTAATTCATCGGTAGACGATGAAGTGAAGAACTCGCTCATCAGCCTCCTGG CAAACCTTAACGGAAGCACCACTGGTGAACCTGACCCGGCCTTTGGTTGGGTTGCAACTACCCATCCTTGCCTTAACCCCTGGCCTGGTATTACTTGTGA TGCTTCTAATAACTCTATCACCAAGATCAGTCTTTCAGGACTTCACCTCTCAGGTGCCTTTCATCCCGCTTCAATTTGCAGCGTGAAGCCTCTCGCTTCA TCTCTTACCCTCATCAACCTGCAGCAGAACCAGATTGTTGGCCAACTCCCACCACATATCTCTAACTGCACAAGTCTAACTCATTTGCTTCTGGGCAGGA ACAATTTCTCTGGACGCCTTCCGGACTCTCTAATCAAGCTGAACAATCTCCGGAAACTTGATTTCTCCCACAACAACTTCTCTGGCGGGTTGCCAAATAT TACCAAACTCTCAGAGATAACACTATTCATTTCCCAGGGGAATCATTTCACAGGTCCATTACCACAGCTAGACTTCCTCAAACTTCAGAAGTTTGATGTG TCCCACAACAACTTCAGTGGCCAGATTCCTGATGTCCATGGAAAGTTCAATCAGGACAGTTTTCTTGACAACCCTGACCTCTGCGGCTCTCCATTGCCAA AGCCGTGTATACCTTGGAACACAAGCAAAACAGAAACTCAAAATTCCGATGATGGCAGCAAGAAGAAATCGAACGGTGTGTCGAGAAATCAGATTCTGAT GTACTCTGGGTACATCGTTCTTGGATTAGCACTCGCCAGCTTCATCATTTGCAAGATGTACATGAGAAATAAGAGTGGTGGTGGTGGGTCTAAGAAAGGT GATATGGAGAACCACAGGGTTGTTGCTTCTGTAGATGAGGGTAGTAGTAGCTCAGATCATGGAAACCATGGTGGTCATTCCTGGGACAGCAAATCAGAGT TGTCTGAAAGTGCATTAATGTCTTCCTCTCTAGTTGTCCTAACTAGTAGCATTGAAGGGAATGGTGGGCTCGATTTCGACCAACTACTCAAGGCTCCAGC TGAGTTGTTGGGGAGGGGGAAGCATGGAAGCCTGTACCAGGTTAATTTGAACAGTGGGATGACAGTGGTTGTCAAAAGAATCAAAGATTGGCCAATTCCT AGTGCTGAGTTCAAGCATAGGATGTACAGGATCCACCAAGCTGATACCCATCCAAATGTGTTGCCTCCACTCGCATTTTACTATTCCCAACATGAGAAAC TTCTAGTCTATGCTTATCAGGAGAATGGAAGTCTCTTCAGATATATCCATGGAACAAAGATGGGACAAGCATTTGAGTGGAGTAAGAGGCTAAGAGTAGC AGGCACCATTGCTGAAGCTTTAGTCTTGATGCACAAGAAGCTTTACGAGGATGGGATTGGCCACGGGAACCTGAAATCCTCCAACATTCTGCTGAACCAC AACCTGGAGCCTTGCATAAGCGAGTATGGACTGATGTCATCTGCACAAGACAAAGACGAGGGCTCGAACAGCTTCAGTTTCAGTGAGGTTAAGCAGGCCA ATTCCAGCACATTCAGATCAGACGTTTATGGGTTTGGAGTCATCCTGCTCGAACTGCTGACTGGGAAGATGGTGCAGAACAACGGAATCAGCTTGCCTAG CTGGGTCCATAGTGCGGTTAGGGAAGAATGGACAGTGGAGGTTTTCGACAAGCAACTGATATCAGAAGGTGCAAGTGAAGAAAGAATGTTGAATCTGCTT CAAGTTGCTATCAAATGTGTCCATGAATCTGAATACGACAGGCCTTCTATCAATCAAGTCGCAGTTATGATCAACGCGATAAGAGAAGAAGATGAGAGAT CTACGATGAATACTTACTGA
AA sequence Show only first row Show all	>Lus10039422 pacid=23175495 polypeptide=Lus10039422 locus=Lus10039422.g ID=Lus10039422.BGIv1.0 annot-version=v1.0 MRAIVISLFLISLYPTANSSVDDEVKNSLISLLANLNGSTTGEPDPAFGWVATTHPCLNPWPGITCDASNNSITKISLSGLHLSGAFHPASICSVKPLAS SLTLINLQQNQIVGQLPPHISNCTSLTHLLLGRNNFSGRLPDSLIKLNNLRKLDFSHNNFSGGLPNITKLSEITLFISQGNHFTGPLPQLDFLKLQKFDV SHNNFSGQIPDVHGKFNQDSFLDNPDLCGSPLPKPCIPWNTSKTETQNSDDGSKKKSNGVSRNQILMYSGYIVLGLALASFIICKMYMRNKSGGGGSKKG DMENHRVVASVDEGSSSSDHGNHGGHSWDSKSELSESALMSSSLVVLTSSIEGNGGLDFDQLLKAPAELLGRGKHGSLYQVNLNSGMTVVVKRIKDWPIP SAEFKHRMYRIHQADTHPNVLPPLAFYYSQHEKLLVYAYQENGSLFRYIHGTKMGQAFEWSKRLRVAGTIAEALVLMHKKLYEDGIGHGNLKSSNILLNH NLEPCISEYGLMSSAQDKDEGSNSFSFSEVKQANSSTFRSDVYGFGVILLELLTGKMVQNNGISLPSWVHSAVREEWTVEVFDKQLISEGASEERMLNLL QVAIKCVHESEYDRPSINQVAVMINAIREEDERSTMNTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10039422 [exp]	0	1
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	7.4	0.8754
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10009339 [exp]	7.5	0.8366
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	9.8	0.8668
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10015229 [exp]	13.0	0.8492
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	18.6	0.8241
AT1G49180			protein kinase family protein ...		Lus10020855 [exp]	26.4	0.8402
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	27.6	0.8411
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	31.0	0.8448
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	36.5	0.8168
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10004692 [exp]	41.5	0.8422

Compare expression of checked genes

Lus10039422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.