Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28030 251 / 7e-76 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT5G26680 68 / 8e-13 5'-3' exonuclease family protein (.1.2) AT3G48900 60 / 4e-10 single-stranded DNA endonuclease family protein (.1.2) AT1G01880 59 / 1e-09 5'-3' exonuclease family protein (.1.2) AT1G29630 45 / 4e-05 5'-3' exonuclease family protein (.1.2.3) AT1G18090 43 / 0.0001 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027451 [exp] 63 / 6e-11 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10005744 [exp] 60 / 7e-10 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10041375 [exp] 58 / 2e-09 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10027250 [exp] 52 / 2e-07 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10036554 [exp] 49 / 2e-06 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10004608 [exp] 43 / 0.0001 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10002782 [exp] 43 / 0.0002 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10039424 [exp] 43 / 0.0002 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10000270 [exp] 42 / 0.0004 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070500 [exp] 266 / 3e-81 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.013G000700 [exp] 64 / 2e-11 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.014G077300 [exp] 63 / 4e-11 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.015G142800 [exp] 62 / 8e-11 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Potri.015G041400 [exp] 47 / 7e-06 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 44 / 0.0001 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF00752 [flax] [poplar] XPG_N XPG N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039423 pacid=23175574 polypeptide=Lus10039423 locus=Lus10039423.g ID=Lus10039423.BGIv1.0 annot-version=v1.0 ATGGGAGTCCAGGGTCTGTGGGACCTACTCGCTCCCGTCGGCCGTCGTGTGTCCGTTGAAACGCTTTCCGGGAAGAGGCTCGCAATCGATGCGAGTATTT GGCTGGTCCAGTTCATGAAGGCGATGAGGGACGACAATGGAGATATGGTCCGGAATGCTCATTTGCTAGGGTTCTTCCGTCGAATTTGCAAGCTTCTGTA TCTCAGGACCAAGCCTGTATTCGTATTTGATGGAGGAACTCCTGCTCTGAAGCGTCGCACGGTTATTGCCAGACGACGGCAGCGTGAAAATGCTCAGGCT AAGATACGGAAAACGGCCGAGAAATTACTTCTTAATCAACTTAAGGCAGCGAGGCTGAAAGAATTGGCAAAGGATCTTGAAAACCAGAGGAAGAACCAGA AGAATGATCCGAAGGGAAAGAAGGTTACATCAGAACAGACAGCCAAGGAGCCAAGCATTGTTGAGACTGGGGATGCAGCAATTGGTTGTTCCAATCAAGA GAAACTGGATGAGATGTACGAAATGGATTTGTCGTATGCTTCACTCCAGCTGGCAGCATCTATTGCAGCGGAGGAAGATGGGGGTATTAAAAATGCATCA ACTTCTGCTGGTCTGGTTGGGGAGGACGATAAATATGAAGACTTGATACTGCCTGATATAGACGGTGACCTTGATCCGGATGTTTTAGCTGCTTTGCCTC CACCAATGCAACATAAACTTCTGATGAAGAAAATATCAGCAATGGAAGACAGAAAGAGCCGTGACCTAGAGAAGCATAATTTCCAAGGTGTTGATGAATG CTAG
AA sequence Show only first row Show all	>Lus10039423 pacid=23175574 polypeptide=Lus10039423 locus=Lus10039423.g ID=Lus10039423.BGIv1.0 annot-version=v1.0 MGVQGLWDLLAPVGRRVSVETLSGKRLAIDASIWLVQFMKAMRDDNGDMVRNAHLLGFFRRICKLLYLRTKPVFVFDGGTPALKRRTVIARRRQRENAQA KIRKTAEKLLLNQLKAARLKELAKDLENQRKNQKNDPKGKKVTSEQTAKEPSIVETGDAAIGCSNQEKLDEMYEMDLSYASLQLAASIAAEEDGGIKNAS TSAGLVGEDDKYEDLILPDIDGDLDPDVLAALPPPMQHKLLMKKISAMEDRKSRDLEKHNFQGVDEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039423 [exp]	0	1
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	6.7	0.8925
AT1G17450			B-block binding subunit of TFI...		Lus10000374 [exp]	9.8	0.9073
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030887 [exp]	16.0	0.8265
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	16.4	0.9046
AT1G50890			ARM repeat superfamily protein...		Lus10019617 [exp]	16.7	0.8476
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	19.2	0.9020
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	19.4	0.8976
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039854 [exp]	19.6	0.9003
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	20.5	0.8977
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	20.8	0.8934

Compare expression of checked genes

Lus10039423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.