Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28030 510 / 5e-156 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT1G01880 122 / 2e-28 5'-3' exonuclease family protein (.1.2) AT3G48900 92 / 7e-19 single-stranded DNA endonuclease family protein (.1.2) AT5G26680 76 / 4e-14 5'-3' exonuclease family protein (.1.2) AT1G29630 61 / 4e-09 5'-3' exonuclease family protein (.1.2.3) AT1G18090 51 / 6e-06 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039482 [exp] 360 / 9e-115 AT3G28030 47 / 7e-06 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10036554 [exp] 113 / 2e-25 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10027451 [exp] 113 / 2e-25 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10041375 [exp] 109 / 4e-24 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10005744 [exp] 107 / 2e-23 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10000270 [exp] 77 / 2e-14 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10002782 [exp] 71 / 6e-12 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10011991 [exp] 70 / 9e-12 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10004608 [exp] 69 / 1e-11 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070500 [exp] 550 / 8e-169 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.015G142800 [exp] 115 / 5e-26 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Potri.014G077300 [exp] 103 / 2e-22 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.013G000700 [exp] 73 / 4e-13 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 64 / 5e-10 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Lus10039424 pacid=23175617 polypeptide=Lus10039424 locus=Lus10039424.g ID=Lus10039424.BGIv1.0 annot-version=v1.0 ATGTTTCCTTCCTTCATTTCTTCATTGGGGTTGCCATTGGACCAGATTGCGAAAAACAAGAATGAGAAGGGCAAGGAAATATTATCAGAGACAACCGGAT TAGAGAACAACAATTCAGAAGGGTTTGATGAGGCCATGGAGACTTTCAACCAGGAAAAGCTGGACGAAATGTTGGCTGCATCTATTTTGGCTGAAGACGA TGGGAGTAATAATTGTGCAACATCTGCTGCATCTGTTCCCTTTGAGGAGGGGGATGAAGATGACTATGATGAAGAGATGATTCTTCCATCAGTGCCAGGG AAATTTGATCCTGCTGTCTTAGCAGCTTTGCCGCCATCGATGCAACTGGATCTCCTTGTGCAGATGAGAGAGAGGTTGATGGCTGAAAACAGACAACGAT ATCAAAAAGTGAAAAAGGCTCCAGAAAAATTCTCTGAGCTCCAGATACAAGCTTATCTCAAAACTGTTGCATTTCGTCGAGAAATAGATCAAGTGCAGAA AGCTGCTGCTGGGAAAGGAGTAGGTGGTGTTCAAACTTCAAGGATAGCCTCTGAAGCCAGCCGAGAATTTATCTTCTCATCATCGTTTACTGGGGATAAG CAGTTGTTTACGTCTGGTGGAGTGCTGGACAGTGGAGATAAGCAGCAGCAGGAGAAGGAGGCACCTAGCTGGCTTCAGTCTGATTCTGTTGGTGGCGACG TTTCTGCCGGTATTTCAACTACTACGGCAGGGCATGTCCAAGACAAATCTGGAAATGTTTTTGATGATGATGACGTTGAAACATATACAGATGAAAGGGG TCGTATCCGTGTAAGTAGAGTACGAGCCATGGGGATGCGGATGACCCGTGATTTACAACGGAACTTGGATTTAATGAAGGAGATTGAACAGGATGCGATA GGCACTGCAATTACTCAATCTAAAACCAAAGGAAAAGGAACTAGTTCCGAACAAGAAGTGAGATGTTTGGATGATACAAGTGTTGGCTCTACTCTGTTGA AGGATAAAAATGGCCCCACTGTGGCAGATAATGTCAGCTCTTTGCAGATTTCATTTGAAATTGGGGACAGATCTTTTGAAAGTGATGATGACATGTTCTC TCATTTAGTTGCTGGACAACCAGTAGATTTATCGTATGTTGACAATGATACAGCACGGGGACAGTGTCCTGATTCAGCTTCTGATAGTGATTGGGAAGAA GGTACCATTACAACGAAATTTGATGGTTCTTCACCTGCCCCTGAGATGGTATATAAATCATCCCTAAAGGCTAGCAGTGTTAATGATGACAGTGAGGTAG AGTGGGAGGAAGGACCCTCTGACGCCAACAATGGTATTTTCTGCCAGGTTGTGTCAGGAAAACCGGTTTCAAGAGGTCAGTTGGAAGAAGATCATGATTT GCAGGAAGCCATAAGGATAAGTCTCAAGGATCTCGGAAGTGATAAAGGATTTGCTGAAGAGAAAGAACTTGAAGCTATTGATCCACATGAAAATAGACAA GAGGTGAATATGGTTAGAAAGGATATTCAAGAAAGAAAGATGAACTCTGGCCCTTTGGATGTAAACAATCTCAGCGGTGAGGGTCTAACTAATGAAGCCG ATGAGTTCCTTCCAAGCTCAAAGACTGGAATGCATAAGCTTGATGGTTTCCATAAGTCAGTTTTCGAATATCCTGGTTCTAGGTTTGAAGAACACCCACA GGTGACAACTAAAGAGAATGTAGAAGTACCATGCACAGATGCAGAGCAACATATAGATGCGTTTACCCAGGCTGGTGGGTTATCTACCTCAATTAGTTTA TGTGCAACATACAATTCTGGTATTTCTAAACCAGATGCCATTGTTGGCATACCGAGTGTTGGTGCCGGTACCGTTGAAAAAGGAGCATCCATATTGGTTA GGGATGGTGAGGTTGGTCCTGAAACTGGATCATCATTACATGCAGTTGAGGAAACTATAGCAAACTCTTCAGGAGCATTCATACAATCACCTGAAAGTAG GGCTCCTGCTGATGTCGAGGACCAAGTTGGTGAACCAAAGATCCCAGATGCTGAATATGCTTTGAGGGACACTAGCAATTATGGTACTCCTGTTGCTGCA AAAAATGATAATACTTCTGCACAGGCTAGCTTAGATAAGGAAATACATATTTTGGGTCAAGAATTTATGAACCTGGAAGGTGAACAGAGGAAGCATGAAC GCAATGCAGAATCAGTTACTTGTGAGATGTTTGCAGAGTGTCAGGAGCTGCTTCAAATGTTTGGAATACCATATATAATAGCACCAATGGAGGCAGAAGC TCAATGTGCATACATGGAACTTGCTGGCCTTGTTGATGGTGTTGTGACTGATGACTCTGACGTCCTTCTATTTGGAGCTTGTAGTGTGTACAAGAACATA TTTGATGACCGCAAATATGTGGAGACGTATTTCATGAAGGATATTGAGAAGGAACTTGGCCTGACTAGGGAAAAACTCATTCGTATGGCATTGCTTCTTG GTAGTGATTATACAGAGGGTGTTAGTGGGATTGGCATTGTTAATGCCATCGAGGTTGTCAATGCATTTCCTGAGGACAACGGCCTGCAGAAATTCAGAGA ATGGATAGAATCTCCAGATCCAACTATACTTGGGAACTTGAATGGAAAGCCTGGTTATGCTATGAAGAAGGAAGTATACAAAACTGGTGAGAGTAACCTG GGTCCATCTAACAAAAACACCTCGCCAATGGATGAGAAAAAGAAGTGTGCTGATGAAATTCAAGAGATAAAGCAAACTTTCATGGATAAACATAGAAATG TGAGCAAGAACTGGTACATCCCTTCCTCTTTTCCCAGTGAAGCAGTCATTTCTGCGTATTGGTCTCCGCAAGTAGATAAATCAGCAGAGCCTTTCATATG GGGAAAGCCAGATCAGCACCTTCTTCAACGATTATGCTGGGAAAGATTTGGCTGGAATATTCAAAAGTCAGATGAATTGCTTCTGCCTGTCCTGAAAGAG TACAATAAACGCGAGACTCAACTCCGGTTGGAAGCATTTTACACTTTTAATGAGAGATTTGCAAAGATTCGTAGCAAGAGAATCAAGAAAGCTGTTAAAG GAATTGCACGGAAACAAAGTTCGACGTTGCTTGATGATGTCCCAGTAGAAGTTCCTGAAGGTACTAAGAAAAAGAGAAAACGTCTTGCTGAATCTTCAAA TGTAACTGAAGGACCTTATCTTAGCAGCGACAACAATCTTTCTGGAAAACGTACTGCCAAGAGGTCTGACAAAGGGAGGACAACTGGAGAGGATATCTCA TCTGAGATGGGGATTACTGGGCAAGAGCTGTTGTCAGATGACGAACAGCAAATTTTGAAACCTTCAAATAAAGGAAGGCGAGGCAGAGGTAATGGTGGAA GGAAAGGCAATGGAGCAGGGAGAGAGAGAGGAAGGGGAAGGGGAAGGGGGGCTCGTCGTTTAGGACAACCTGATAACAGTTGCAGCGACACTGACAACAG CAATGATGAGCACGCAGAGCAGAGTCACAACTCAGAAAGGCTGAAAGATCTGCGGCGGTCAAATCGGTTGAGACAGCAAGTTAGTTATACTGATGACATG GATTTGGATGATGTGATGGAGTCTCTAGACCTGGACAGTGAAAGAAAAGCAGGAAAAGCTGACTCGAATCCCCGGAATGCTGAATCAAGTTCAGCGAGAG AACATCAAAATGTGGAAGATATTCCTCTGCAGAATGATTCGCCTGGGGACCATCTTGAAACAGGAGGTGGTTTTTGCATTGATGACGGTGAGGCTGGTCA CTTTGACGCAGGTGAGAACTGTAATCCTTCTGGAGGCAATGCTTCAATAGATTACTTAGAGAGCGGAGGTGGGTTTTGTGTAGACGATGACCAAGGTGAG ACCAGTAAAGTGGCTACAGCTCTTGCTGAAGAAGGCACCGAAAAATCTAGCAGTGGTGGTGCGATGAATGATGTGGAGTTTGCTGCTTTGTCAGTACCTA GCACGACCGATGGTTGGAACGAATCATGGGTGGATGCCAGGAACACAAGTAGAATTGTTAAGCATCCAAACGCTCAGGGAGTGGGAAGAACAGAAAGTGA GGATCATTTCATGATGAGCAGCTCAGCTCATCCTGAAAACAATGTAAAGAGTAGTGTTGGGGATGACGTAGGTGGTCTAAGCGCGATGCCATTCTTGAGA AGAAAGCGAAGGAAGGGTTAA
AA sequence Show only first row Show all	>Lus10039424 pacid=23175617 polypeptide=Lus10039424 locus=Lus10039424.g ID=Lus10039424.BGIv1.0 annot-version=v1.0 MFPSFISSLGLPLDQIAKNKNEKGKEILSETTGLENNNSEGFDEAMETFNQEKLDEMLAASILAEDDGSNNCATSAASVPFEEGDEDDYDEEMILPSVPG KFDPAVLAALPPSMQLDLLVQMRERLMAENRQRYQKVKKAPEKFSELQIQAYLKTVAFRREIDQVQKAAAGKGVGGVQTSRIASEASREFIFSSSFTGDK QLFTSGGVLDSGDKQQQEKEAPSWLQSDSVGGDVSAGISTTTAGHVQDKSGNVFDDDDVETYTDERGRIRVSRVRAMGMRMTRDLQRNLDLMKEIEQDAI GTAITQSKTKGKGTSSEQEVRCLDDTSVGSTLLKDKNGPTVADNVSSLQISFEIGDRSFESDDDMFSHLVAGQPVDLSYVDNDTARGQCPDSASDSDWEE GTITTKFDGSSPAPEMVYKSSLKASSVNDDSEVEWEEGPSDANNGIFCQVVSGKPVSRGQLEEDHDLQEAIRISLKDLGSDKGFAEEKELEAIDPHENRQ EVNMVRKDIQERKMNSGPLDVNNLSGEGLTNEADEFLPSSKTGMHKLDGFHKSVFEYPGSRFEEHPQVTTKENVEVPCTDAEQHIDAFTQAGGLSTSISL CATYNSGISKPDAIVGIPSVGAGTVEKGASILVRDGEVGPETGSSLHAVEETIANSSGAFIQSPESRAPADVEDQVGEPKIPDAEYALRDTSNYGTPVAA KNDNTSAQASLDKEIHILGQEFMNLEGEQRKHERNAESVTCEMFAECQELLQMFGIPYIIAPMEAEAQCAYMELAGLVDGVVTDDSDVLLFGACSVYKNI FDDRKYVETYFMKDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEDNGLQKFREWIESPDPTILGNLNGKPGYAMKKEVYKTGESNL GPSNKNTSPMDEKKKCADEIQEIKQTFMDKHRNVSKNWYIPSSFPSEAVISAYWSPQVDKSAEPFIWGKPDQHLLQRLCWERFGWNIQKSDELLLPVLKE YNKRETQLRLEAFYTFNERFAKIRSKRIKKAVKGIARKQSSTLLDDVPVEVPEGTKKKRKRLAESSNVTEGPYLSSDNNLSGKRTAKRSDKGRTTGEDIS SEMGITGQELLSDDEQQILKPSNKGRRGRGNGGRKGNGAGRERGRGRGRGARRLGQPDNSCSDTDNSNDEHAEQSHNSERLKDLRRSNRLRQQVSYTDDM DLDDVMESLDLDSERKAGKADSNPRNAESSSAREHQNVEDIPLQNDSPGDHLETGGGFCIDDGEAGHFDAGENCNPSGGNASIDYLESGGGFCVDDDQGE TSKVATALAEEGTEKSSSGGAMNDVEFAALSVPSTTDGWNESWVDARNTSRIVKHPNAQGVGRTESEDHFMMSSSAHPENNVKSSVGDDVGGLSAMPFLR RKRRKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	0	1
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	2.0	0.8647
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033296 [exp]	2.2	0.8645
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	2.6	0.8713
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	4.7	0.8695
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	5.7	0.8348
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	7.5	0.8500
AT5G59830			unknown protein		Lus10025307 [exp]	7.7	0.8421
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	9.9	0.8683
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	10.2	0.8202
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	10.6	0.8011

Compare expression of checked genes

Lus10039424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.