Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 375 / 2e-129 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40230 290 / 8e-96 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 286 / 4e-94 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G15540 249 / 5e-80 EamA-like transporter family (.1) AT3G28100 240 / 2e-76 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40210 239 / 2e-76 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28080 237 / 2e-75 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28130 231 / 6e-73 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28070 223 / 7e-70 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G70260 152 / 2e-42 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039479 [exp] 553 / 0 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 393 / 3e-135 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 385 / 6e-133 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 372 / 2e-128 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039430 [exp] 357 / 4e-123 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 226 / 5e-71 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 209 / 2e-64 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 200 / 4e-61 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10029180 [exp] 180 / 1e-53 AT3G28050 220 / 2e-69 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337100 [exp] 432 / 5e-152 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 241 / 5e-77 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G145800 [exp] 233 / 6e-74 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 213 / 4e-66 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 208 / 3e-64 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 153 / 5e-43 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 151 / 3e-42 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.015G042900 [exp] 147 / 1e-40 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G209200 [exp] 145 / 7e-40 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 140 / 4e-38 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10039425 pacid=23175718 polypeptide=Lus10039425 locus=Lus10039425.g ID=Lus10039425.BGIv1.0 annot-version=v1.0 ATGGCAGGGGCAGGAGGATATGTGTACAGAGATGTGCTTGCATTTTCAGTGATGGTGTCTATGGAGTGTATTAATGTTGGGTTGAATACTCTGTTCAAAG CTGCAACTATGGAGGGGATGAGCTACCATGTCTTTGTTGTCTATGCCTATGCAATTGCTGCTCTTGTTCTCCTTCCTGCTCCTTTCTTCTCCCGCAGATC AATACTTCTTCCTCCACTAAACTTCCGAATTCTCTGCAAAATTGGGCTTCTGGGAATCATTGGGAGCTCGTCTCAGATCATGGGGTACACAGGCATCAAT TACAGTTCTCCAACTCTAGCTTCAGCCATCAGTAACCTCACTCCAGCGTTTACCTTCATACTCGCTCTTCTTTTCAGGATGGAAAAGGTTGTGGTGAGGA AAACATCGAGTCAAGCCAAAGTAATGGGCACAATCGTATCAATAGGAGGTGCATTTGTAGTAACTCTGTATCAAGGTCCTGCTATAACAGTTGCCACATC ACAGTCTGTTCAGCAAAATCAATCCCTCCAAATCTCAACGAGCCAAAACTGGGTGCTTGGTGGGGTTTTCCTCACCTGTGAGTACATTCTGGTTCCTTTG TGGTACATTGTTCAGACACAGATAATGAAGGAGTACCCAGCTGAACTCACGGTAGTATTCTTTTACAACTTGGTTGTGAGCATCATGGCAGCGATTGTTG CTCTGATAACGGAAGGAACTTCTTCCAGTGCCTGGATATTAAGGCCTAACGTAGCATTGGCCTCAGTTTTCTGCTCGGGGCTTCTTGGATCGTGCTTGAA CAACAGTGTGCATACGTGGGCATTGCGGATCAAGGGTCCGGTATTTGTAGCAATGTTCAAGCCGTTGTCAATTGCTATTGCTGTGGCTATGGGTGTGATG TTCTTGGGTGACACTCTTCATCTAGGGAGTCTGATAGGGGCAGCAATAATATCAATTGGGTTTTACACTGTGATGTGGGGTAAAGCACAAGAAGAAGACT TTACTGATGACACAAGTGCTAGTTGCAGCAGCAGCAGCCAGCATGAAGCTGAGTCAACTGAAAGTGTAAAGGCACCTCTTTTGAAGAATTATAGGAATGC ACAAGTTTGA
AA sequence Show only first row Show all	>Lus10039425 pacid=23175718 polypeptide=Lus10039425 locus=Lus10039425.g ID=Lus10039425.BGIv1.0 annot-version=v1.0 MAGAGGYVYRDVLAFSVMVSMECINVGLNTLFKAATMEGMSYHVFVVYAYAIAALVLLPAPFFSRRSILLPPLNFRILCKIGLLGIIGSSSQIMGYTGIN YSSPTLASAISNLTPAFTFILALLFRMEKVVVRKTSSQAKVMGTIVSIGGAFVVTLYQGPAITVATSQSVQQNQSLQISTSQNWVLGGVFLTCEYILVPL WYIVQTQIMKEYPAELTVVFFYNLVVSIMAAIVALITEGTSSSAWILRPNVALASVFCSGLLGSCLNNSVHTWALRIKGPVFVAMFKPLSIAIAVAMGVM FLGDTLHLGSLIGAAIISIGFYTVMWGKAQEEDFTDDTSASCSSSSQHEAESTESVKAPLLKNYRNAQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	0	1
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	1.7	0.9260
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10037648 [exp]	3.0	0.9089
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	4.6	0.9134
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	5.5	0.9195
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	5.7	0.9249
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	6.9	0.9199
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	6.9	0.9180
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10028581 [exp]	8.1	0.8926
AT1G04555			unknown protein		Lus10014458 [exp]	9.9	0.9205
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031836 [exp]	10.7	0.8823

Compare expression of checked genes

Lus10039425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.