Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 91 / 2e-22 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40230 86 / 2e-20 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 81 / 1e-18 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28100 74 / 2e-16 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 72 / 1e-15 EamA-like transporter family (.1) AT5G40210 72 / 2e-15 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28070 71 / 2e-15 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28130 71 / 3e-15 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28080 69 / 2e-14 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G44800 54 / 4e-09 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039428 [exp] 161 / 2e-49 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 152 / 4e-45 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039425 [exp] 132 / 8e-38 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 130 / 3e-37 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039430 [exp] 108 / 5e-29 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 102 / 1e-26 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039433 [exp] 72 / 2e-15 AT3G28050 175 / 3e-52 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 70 / 7e-15 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10030842 [exp] 69 / 2e-14 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337100 [exp] 119 / 4e-33 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 74 / 3e-16 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G145800 [exp] 72 / 2e-15 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 70 / 9e-15 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G032100 [exp] 66 / 3e-13 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 59 / 7e-11 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 57 / 3e-10 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G176100 [exp] 56 / 1e-09 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G233600 [exp] 52 / 1e-08 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.010G096100 [exp] 51 / 3e-08 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039426 pacid=23175481 polypeptide=Lus10039426 locus=Lus10039426.g ID=Lus10039426.BGIv1.0 annot-version=v1.0 ATGGAGGGCATGAACCCCCACGTCTTTGTTGCCTACGTCCATGGAATTGCCGCACGGATGGAAAAAGTTGTGGTGAGGAGAAGATCCAGTCAAGCCAAGG TAATGGGGGCGATTGTGTCAATAGCAGGTGCTATCGGTGTAACCCTTTACAAGGGCCCTGCGTTAAAGACAACTCCCACTAGCCAAAGCCAAAGCCAAAA CCAAAACTGGGTCCTCGGTGGGGTTTTCCTCACCTTTGAGTACATTCTGATTCCTTTATGGTTCATCGGCCAGACGCAAATAATGAAGGAGTACCCAGCT GAACTCGCAGTAGTCTTCCTTTACCTTCTAGTTGCGAGCATCGTTGCAGCATCTGTGGCTTTGATTATAGAAGGAATTTCTCCTACTGCCTGGTGCTCAA GACACAGCCAGCTGGTTTCCTCAAGCTTTTGCTAA
AA sequence Show only first row Show all	>Lus10039426 pacid=23175481 polypeptide=Lus10039426 locus=Lus10039426.g ID=Lus10039426.BGIv1.0 annot-version=v1.0 MEGMNPHVFVAYVHGIAARMEKVVVRRRSSQAKVMGAIVSIAGAIGVTLYKGPALKTTPTSQSQSQNQNWVLGGVFLTFEYILIPLWFIGQTQIMKEYPA ELAVVFLYLLVASIVAASVALIIEGISPTAWCSRHSQLVSSSFC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039426 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10019171 [exp]	2.6	0.8002
AT2G20410			RNA-binding ASCH domain protei...		Lus10000855 [exp]	3.5	0.7369
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	6.3	0.7754
					Lus10025748 [exp]	7.2	0.7904
					Lus10005485 [exp]	8.5	0.6183
AT4G01410			Late embryogenesis abundant (L...		Lus10012605 [exp]	11.0	0.7761
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	12.0	0.7472
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	13.0	0.7072
AT1G14750		SDS	SOLO DANCERS, Cyclin family pr...		Lus10034581 [exp]	18.0	0.6708
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	20.1	0.7021

Compare expression of checked genes

Lus10039426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.