Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021853 [exp] 237 / 9e-79 ND / Lus10015574 [exp] 213 / 2e-69 ND / Lus10002049 [exp] 186 / 1e-58 ND / Lus10039555 [exp] 154 / 3e-46 ND / Lus10018977 [exp] 152 / 4e-46 ND / Lus10039965 [exp] 127 / 2e-36 ND / Lus10004513 [exp] 125 / 1e-35 ND / Lus10022558 [exp] 110 / 1e-29 ND / Lus10006395 [exp] 107 / 6e-28 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03101 [flax] [poplar] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039427 pacid=23175705 polypeptide=Lus10039427 locus=Lus10039427.g ID=Lus10039427.BGIv1.0 annot-version=v1.0 ATGGCTAAGGACATTGCCTTAGGCTTAGGGTTTCAATTGACGCGTGGCTCACATAAGAAGAACCCGCGTGAAGAAGAAAAGCGTTTGTACCTATACTGCT CCCATGGTGGCAGGGGCCCATTGCAATCCACAACGACTTCAGAGAGTTCGCGTACGACTACAACATCCTTCACAAGTTGTACGTTCATGGTGTGTGTGCG CCCTACCTTTGTTGATGCTGAGTGGAAATGGAAGATTGACACGGTCAAAGATGATGTGAAACGCGGGACTTTTAGGTCATTTCACAACCACCACTTCGAG TTGTGGCGTGAAGGTACACAACAGCGGAATCAGCTTACCGACAAGATGAAAGATCACATTAGACAGTTGGAGGAGAACCATGTTCCGCCAAGACAGATGC AGAGCATTCTGAACAATGAGTACGGCCGTCGGATCAATATACGACAGATTTATAACGAGACAGGCAAAATACGGCTGAGTAGGTTGGGAAACATGAACCC CATGCAATGGGCGGTGACAGAGGCGCGTAAATTGGGGTACTTTATGAAGTACATAAAGGATTTCAACGACCATGTTAGTCATCTGTACGTGTCACATGCG GAGTCAGCGTCAACAAAGGTAGGCCGCACACACACCATGAACGTACAACTTGTGAAAGATGTTGTAGTCGTACGCGAACTCTCTGAAGTTGTTGTGGATT GCGATGGACCGCCGACCGTCTCGTGCGTCGGTCGGCATGTCGATGGTCTGTTTACCTCTGTTCCGGCAGCGGCAGCGGGGGCAGCCGGCGGCGGCGGGGA CAAATTCGAGAGGTTTTTTAAAGGGTCGTTTGGAATGAAGCATAACTGTTCTTCGAAATTCCGCGTTTTATAA
AA sequence Show only first row Show all	>Lus10039427 pacid=23175705 polypeptide=Lus10039427 locus=Lus10039427.g ID=Lus10039427.BGIv1.0 annot-version=v1.0 MAKDIALGLGFQLTRGSHKKNPREEEKRLYLYCSHGGRGPLQSTTTSESSRTTTTSFTSCTFMVCVRPTFVDAEWKWKIDTVKDDVKRGTFRSFHNHHFE LWREGTQQRNQLTDKMKDHIRQLEENHVPPRQMQSILNNEYGRRINIRQIYNETGKIRLSRLGNMNPMQWAVTEARKLGYFMKYIKDFNDHVSHLYVSHA ESASTKVGRTHTMNVQLVKDVVVVRELSEVVVDCDGPPTVSCVGRHVDGLFTSVPAAAAGAAGGGGDKFERFFKGSFGMKHNCSSKFRVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039427 [exp]	0	1
					Lus10022109 [exp]	1.7	0.8660
					Lus10028091 [exp]	4.0	0.7441
					Lus10033844 [exp]	4.2	0.7729
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	6.0	0.7597
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10001065 [exp]	15.2	0.7176
AT2G04865			Aminotransferase-like, plant m...		Lus10032799 [exp]	15.5	0.6948
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029658 [exp]	17.3	0.7073
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10018329 [exp]	20.3	0.6868
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	24.7	0.6987
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011315 [exp]	24.8	0.6310

Compare expression of checked genes

Lus10039427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.