Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 322 / 4e-109 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 249 / 2e-80 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40230 245 / 8e-79 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40210 240 / 4e-77 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28130 226 / 9e-72 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28100 226 / 2e-71 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 218 / 2e-68 EamA-like transporter family (.1) AT3G28080 218 / 2e-68 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28070 214 / 4e-67 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G21890 156 / 3e-44 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039425 [exp] 462 / 5e-164 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 459 / 1e-162 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 430 / 3e-150 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 346 / 2e-118 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039430 [exp] 308 / 5e-104 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 232 / 6e-74 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039426 [exp] 202 / 7e-65 AT3G28050 110 / 7e-30 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 201 / 5e-62 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10030842 [exp] 199 / 3e-61 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337100 [exp] 393 / 4e-137 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G145800 [exp] 248 / 4e-80 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 227 / 4e-72 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G032100 [exp] 226 / 2e-71 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 224 / 1e-70 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 172 / 2e-50 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 159 / 8e-46 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 157 / 7e-45 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 154 / 9e-44 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.015G042900 [exp] 154 / 1e-43 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10039428 pacid=23175539 polypeptide=Lus10039428 locus=Lus10039428.g ID=Lus10039428.BGIv1.0 annot-version=v1.0 ATGGAGGGTATGAACTCTAATGTCTTTGTTACCTACGTACATGCAATTGCTGCTCTTGTTCTTCTTCCTGCTCCTTTCTTCTCTCACAGGTCAACAGTTC TTCCTCCTCTAAGCTTCCCTTTATTCTGCAAAATTGGGCTTCTTGGGGTCGTTGGGAGCTCATCCCAAATGATGGGGTACGCAGGGATTAATTATAGCTC TCCAGTTCTAGCTTCAGCCATCAGCAACATCATCCCAGCTTTCACCTTCATACTTGCTGTCACTTTCAGGATGGAAAAAGTTGTGGTGAGGAGAAGATCC AGTCAAGCCAAGGTAATGGGGGCGATTGTGTCAATAGCAGGTGCTATCGGTGTAACCCTTTACAAGGGCCCTGCGTTAAAGACAACTCCCACTAGCCAAA GCCAAAACCAAAACTGGGTCCTTGGTGGGGTTTTCCTCACCTTTGAATACATTCTTGTTCCTTTATGGTTTATTGGCCAGTCTATCTCCTTGTGTATCGG TGTGGTGAAAAAGACACAAATAATGAAGGAGTACCCAGCTGAACTCACAGTAGTCTTCTTTTACGTTCTAGTTGCGAGCATCGTTGCAGCATTTGTGGCT TTGATTACAGAAGGAACTTCTCCCAGTACTTGGATATTAAGGCCCAATCTAGCATTAGCCTCAGTTTTCTGCTCGGGAATTCTTGGAACGTGTTTGAACA CCTGCGTTCATACGTGGGCATTACGGATAAAGGGTCCTGTGTTCGTAGCAATGTTCCGGCCATTCTCCGTGGCCATTGCTTTTGTTATGGGTTTGATGTT CTTAGGTGAAACTCTTCATCTGGGAAGTCTGATTGGGGTGGGAGTAATATCAATTGGCTTTTACACTATGATGTGGGGGAAATCTCAAGAGGAGGAGTTA GGAGATGATGAGAACGGTGTTAGTTGCAGCAGTAGCCAGCATGAACCTGATTCCACTCGAAGCCTAAAGGGACCTCTTTTGCAGAATTACAGAAACCAAC AAGTGTAA
AA sequence Show only first row Show all	>Lus10039428 pacid=23175539 polypeptide=Lus10039428 locus=Lus10039428.g ID=Lus10039428.BGIv1.0 annot-version=v1.0 MEGMNSNVFVTYVHAIAALVLLPAPFFSHRSTVLPPLSFPLFCKIGLLGVVGSSSQMMGYAGINYSSPVLASAISNIIPAFTFILAVTFRMEKVVVRRRS SQAKVMGAIVSIAGAIGVTLYKGPALKTTPTSQSQNQNWVLGGVFLTFEYILVPLWFIGQSISLCIGVVKKTQIMKEYPAELTVVFFYVLVASIVAAFVA LITEGTSPSTWILRPNLALASVFCSGILGTCLNTCVHTWALRIKGPVFVAMFRPFSVAIAFVMGLMFLGETLHLGSLIGVGVISIGFYTMMWGKSQEEEL GDDENGVSCSSSQHEPDSTRSLKGPLLQNYRNQQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	0	1
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	1.0	0.9256
AT5G04980			DNAse I-like superfamily prote...		Lus10028884 [exp]	1.4	0.9187
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10004746 [exp]	2.0	0.9137
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	3.2	0.9107
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	3.5	0.9160
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	5.2	0.8987
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	7.3	0.9101
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	7.7	0.8856
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	7.9	0.9062
AT5G04980			DNAse I-like superfamily prote...		Lus10008934 [exp]	8.2	0.8609

Compare expression of checked genes

Lus10039428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.