Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 342 / 4e-115 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 286 / 3e-93 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40230 283 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40210 249 / 2e-79 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28100 249 / 6e-79 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28070 238 / 1e-74 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28080 236 / 4e-74 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT4G15540 231 / 5e-72 EamA-like transporter family (.1) AT3G28130 229 / 2e-71 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G21890 149 / 8e-41 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039425 [exp] 468 / 1e-164 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 467 / 5e-164 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 424 / 8e-148 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 371 / 2e-126 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039430 [exp] 315 / 4e-105 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 226 / 2e-70 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 199 / 6e-60 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 194 / 4e-58 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039433 [exp] 192 / 8e-58 AT3G28050 175 / 3e-52 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337100 [exp] 395 / 3e-136 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G145800 [exp] 242 / 2e-76 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 237 / 1e-74 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G032100 [exp] 218 / 3e-67 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 205 / 4e-62 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 173 / 7e-50 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 160 / 6e-45 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 154 / 9e-43 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 150 / 3e-41 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 150 / 9e-41 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10039429 pacid=23175614 polypeptide=Lus10039429 locus=Lus10039429.g ID=Lus10039429.BGIv1.0 annot-version=v1.0 ATGACAGGAGGTTATGTGTACAGAGATGTGATGCCATTTTCAGCCATGGTGATTATGCAGAGTGTTGGTGTTGGGCTGAACACATTGTTCAAAGCTGCAA CTATGGAAGGCATGAGATACCATGTCTTTGTTGCCTATGTCCATGCAATTGCTGCTCTGATTCTTCTCCCTGCTCCTTTCTTTTCCCACAGGTCTAGTGT TCTTCCTCCACTAAGCTTCCCTATACTCTGCAAAATTGGGCTTCTTGGGGTCATCGGGAGCTCATCCCAGATGATGGGATACAGTGGCATCAATTACAGC TCTCCAACTCTTGCTTCAGCCATCAGCAACATTGCCCCAGCTTTTACCTTCATACTGGCTGTCACTTTCAGGATGGAAAAAGTAATGGCGAGAAGAAGAT CCAGTCAAGCAAAGGTAATTGGTGCACTTGTGTCAATAGCAGGTGCCATTGCTGTAACTCTTTACAAGGGTCCCGCGTTAACAACAGCTGCCACATCATC AACTAATCATCAACCCCTCCATATCTCAACAACTAGCAAGAACTGGGTCCTAGGCGGGGTTTTCCTAACCTGTGAATACATTCTGGTTCCTCTATGGTTC ATTGGCCAGACACAAATAATGAAGGAGTACCCGTCTGAACTCACCGTAGTCTTCCTTTACGATCTAGTTGCGAGCATCGTTGCAGCATCTGTGGCTTTGA TTACAGAAGGAACTTCTCCCACTGCCTGGATATTAAGACCTAATCTAGCATTAGCCTCAGTTTTCTGCTCGCGTTCATACGTGGGCATTACGGGTAAAGG GTCCAGTTTCGTAGCAATGTTCAGGCCGTTGTCCATAGCCATTGCTTTAGCTATGGGTGTGATGTTCTTGGGTGATGCACTTCATCTAGGAAGTCTGGTT GGGGCAGCAATAATATCAATTGGCTTTTACATTATGATGTGGGGGAAAGCTCAAGAGGAAGAGTTGGAAGATGAAAATCTCAACAGCGGCCAACTTGAAC CTGATTCCACTCAGAGTGCAAAGACACCTCTTCTGAAGAATTACAGAAATGAACAGTCCACTACACAATGTTGTCTCACTACCAGCAATTGTACATGTCG TGAACGTTTCCGTCCGCCCGCTGATGGCGAGGGATGGTTCGGAGTCGCCACCAATCGCTTAAAAGTGGATTGGACACTTGGAGCCCGGTTCAAGCTTTGG AACCTAAACCGGGCATGGTCTGCGTTCAGAGATCTGGGTAAGGGGGACGGTTACGTGTGTGGAAGGATTAGCACCCCCACAACGCCCGGTAAACCGAAGG ATGATAAGTTGCTTCAAGGTCGGAAGTGA
AA sequence Show only first row Show all	>Lus10039429 pacid=23175614 polypeptide=Lus10039429 locus=Lus10039429.g ID=Lus10039429.BGIv1.0 annot-version=v1.0 MTGGYVYRDVMPFSAMVIMQSVGVGLNTLFKAATMEGMRYHVFVAYVHAIAALILLPAPFFSHRSSVLPPLSFPILCKIGLLGVIGSSSQMMGYSGINYS SPTLASAISNIAPAFTFILAVTFRMEKVMARRRSSQAKVIGALVSIAGAIAVTLYKGPALTTAATSSTNHQPLHISTTSKNWVLGGVFLTCEYILVPLWF IGQTQIMKEYPSELTVVFLYDLVASIVAASVALITEGTSPTAWILRPNLALASVFCSRSYVGITGKGSSFVAMFRPLSIAIALAMGVMFLGDALHLGSLV GAAIISIGFYIMMWGKAQEEELEDENLNSGQLEPDSTQSAKTPLLKNYRNEQSTTQCCLTTSNCTCRERFRPPADGEGWFGVATNRLKVDWTLGARFKLW NLNRAWSAFRDLGKGDGYVCGRISTPTTPGKPKDDKLLQGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	0	1
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	1.0	0.9432
AT3G52070			unknown protein		Lus10039603 [exp]	1.4	0.9378
					Lus10012544 [exp]	2.0	0.9133
AT1G71150			unknown protein		Lus10007946 [exp]	3.7	0.8874
AT2G01870			unknown protein		Lus10009946 [exp]	4.2	0.9253
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	5.5	0.9017
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	6.3	0.8909
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10022449 [exp]	7.7	0.8994
AT1G02630			Nucleoside transporter family ...		Lus10002167 [exp]	7.9	0.8775
AT3G07610		IBM1	increase in bonsai methylation...		Lus10025380 [exp]	8.0	0.8839

Compare expression of checked genes

Lus10039429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.