Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 295 / 1e-98 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 257 / 7e-84 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40230 250 / 3e-81 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40210 203 / 2e-63 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 202 / 6e-63 EamA-like transporter family (.1) AT3G28100 194 / 1e-59 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28130 191 / 2e-58 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28080 181 / 1e-54 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28070 175 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G21890 131 / 3e-35 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039478 [exp] 523 / 0 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039425 [exp] 392 / 1e-136 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 384 / 8e-134 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 335 / 3e-113 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 291 / 2e-97 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 201 / 4e-62 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039433 [exp] 190 / 1e-58 AT3G28050 175 / 3e-52 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 182 / 3e-55 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 182 / 7e-55 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337100 [exp] 368 / 2e-127 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 205 / 1e-63 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G145800 [exp] 182 / 4e-55 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 177 / 4e-53 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 177 / 4e-53 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 143 / 1e-39 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 138 / 4e-38 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 137 / 1e-37 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G051500 [exp] 137 / 3e-37 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 133 / 3e-36 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10039430 pacid=23175510 polypeptide=Lus10039430 locus=Lus10039430.g ID=Lus10039430.BGIv1.0 annot-version=v1.0 ATGACGGGATTTCATTTCCAGAATGTAGTACCGTTCGCAGTGATGGTGAGCTTGCAGATTATCAATGTTGGGATTAACACGCTCTTCAAAGCTGCTACTG TTGAGGGCATGAATTACCACGTCTTCATCGTTTACGACTATGCAATCGCTGCTTTTACTCTGCTTCCTGCTCCTTTCATCTCCAAAAGATCAAGAGTTCT TCCACCTTTGAGTTCCTCAATAATGTGCAAAATCGGGCTTCTCGGGATAATAGGGAGCTTATCTCAGATCATGGCATACACAGGCATCAACTACAGTTCC CCAACTCTTGCATCAGCCATCAGCAACCTCACTCCAGCTTTTACTTTCTTGTTTGCCATCATTTTTAGGATGGAAAGAGTTTGTGTCAGAAGATCATCCA GCCAGGCCAAAATTGTGGGTACCGTAGTGGCAATAGCAGGTGCATTTGTGGTTACCCTGTACAAGGGTCCCCCGATTTTCATGCCACCATCACCATCTGC TCCATCAACTCAACCAAATCAATCTCTTCACTACTCCTCAACAACGCAATATTGGGTACTTGGTGGGATTTGTCTCACCGCCAAATATATATTGGACCCT CTTTGGTACATTGTTCTGACGCAGATAATGAAGGAATACCCTGCAGAACTCACAGTAATATTCTTCTACAACTTGTTTGTATGCATTGCAACCGCAGTCT TCGCTCTGATGACCGTGGGGACATTGTCGAGTGCCTGGATGTTGACTACTTACACAGCATTAGCCTCTGTGTTCTGTTCGGGAGTGCTTGGATCATCATT GAGCAATGGAGTTGATGCATGGGTGTTGCGTGTCAAGGGTCCTGTATTTGTGTCCATGATCAAACCGTTTGCAATGATCGTTGCTGTCACCATGGGAGTG ATATTTCTGGGTGATATTCTGCGTCTTGGAAGGTAA
AA sequence Show only first row Show all	>Lus10039430 pacid=23175510 polypeptide=Lus10039430 locus=Lus10039430.g ID=Lus10039430.BGIv1.0 annot-version=v1.0 MTGFHFQNVVPFAVMVSLQIINVGINTLFKAATVEGMNYHVFIVYDYAIAAFTLLPAPFISKRSRVLPPLSSSIMCKIGLLGIIGSLSQIMAYTGINYSS PTLASAISNLTPAFTFLFAIIFRMERVCVRRSSSQAKIVGTVVAIAGAFVVTLYKGPPIFMPPSPSAPSTQPNQSLHYSSTTQYWVLGGICLTAKYILDP LWYIVLTQIMKEYPAELTVIFFYNLFVCIATAVFALMTVGTLSSAWMLTTYTALASVFCSGVLGSSLSNGVDAWVLRVKGPVFVSMIKPFAMIVAVTMGV IFLGDILRLGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	0	1
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10028185 [exp]	1.4	0.7384
AT3G54000			unknown protein		Lus10016465 [exp]	4.0	0.7393
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10030303 [exp]	12.1	0.6798
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	15.3	0.6914
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	17.1	0.7340
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	20.7	0.6947
AT2G34930			disease resistance family prot...		Lus10041266 [exp]	23.2	0.6416
AT1G10660			unknown protein		Lus10009991 [exp]	24.4	0.7130
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	25.2	0.6919
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	25.9	0.6986

Compare expression of checked genes

Lus10039430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.