Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033028 [exp] 202 / 5e-65 ND / Lus10001874 [exp] 170 / 8e-53 ND / Lus10021744 [exp] 149 / 8e-46 ND / Lus10023812 [exp] 139 / 1e-40 ND / Lus10005734 [exp] 140 / 2e-40 ND / Lus10007680 [exp] 133 / 7e-40 ND / Lus10032696 [exp] 128 / 3e-38 ND / Lus10008397 [exp] 126 / 1e-37 ND / Lus10012674 [exp] 123 / 3e-36 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039431 pacid=23175492 polypeptide=Lus10039431 locus=Lus10039431.g ID=Lus10039431.BGIv1.0 annot-version=v1.0 ATGAGTTCAACACCTACCTTCGCTCGAGCGATTCCTGTTTTTCTGAAGAAAATGAAGATCCCAACGGAGGCCATCCTCCGAGCTGTGTATTATCATAATC TTATGGTGGCCAACAATACTATTGCTGGGTATTGGCTCCGGCCATGCACGGATGAAGAGTCTTGGGAAGCTATTTACTACATGTTTGAACATTCGGGTTC ACAGAACGTTAACGAGGTCTCTCAGTGCGGCGAACAACACAACGATGATGCCGCGGATGACGACGAGCTTCACGATGAGGCTGGGTACGAGCCTAGAAAC AAGAATGGGGAAGAGGATCAGGCCTCGAGTGAGAATGACGACCGTACACCAAGTGGCCCCCTCCATCTAGAGGGGGAGGATGCTGATGTCATACTCGGAG CGGGCGCAACAACATCGTCTTGTGCCTCCATTCGTGAGTACACTCCATCCGAGCTATACACAATGTTGGGGGACAACATCGATGAGGTTTTGAATGTTGA CCATTACGAGGGTGGCCCTAAAAACCCAAATTTCAACCTAACTCGTGAACATTTCTACATCGGTCAACGATTTTACACGAAGAAGGAGGCAAGTCTTACT GTCAAACATTAG
AA sequence Show only first row Show all	>Lus10039431 pacid=23175492 polypeptide=Lus10039431 locus=Lus10039431.g ID=Lus10039431.BGIv1.0 annot-version=v1.0 MSSTPTFARAIPVFLKKMKIPTEAILRAVYYHNLMVANNTIAGYWLRPCTDEESWEAIYYMFEHSGSQNVNEVSQCGEQHNDDAADDDELHDEAGYEPRN KNGEEDQASSENDDRTPSGPLHLEGEDADVILGAGATTSSCASIREYTPSELYTMLGDNIDEVLNVDHYEGGPKNPNFNLTREHFYIGQRFYTKKEASLT VKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039431 [exp]	0	1
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10031206 [exp]	1.0	0.7922
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10025976 [exp]	13.3	0.6154
AT5G65550			UDP-Glycosyltransferase superf...		Lus10043445 [exp]	22.2	0.6588
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10011231 [exp]	24.0	0.6585
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	30.5	0.6348
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	32.2	0.6339
					Lus10007779 [exp]	32.9	0.6220
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	45.5	0.6205
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020634 [exp]	48.1	0.5714
AT3G06240			F-box family protein (.1)		Lus10034007 [exp]	51.8	0.5441

Compare expression of checked genes

Lus10039431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.