Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 174 / 7e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40230 154 / 4e-44 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 150 / 2e-42 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40210 144 / 1e-40 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28100 136 / 2e-37 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28130 130 / 3e-35 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28080 129 / 8e-35 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28070 126 / 6e-34 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT4G15540 124 / 4e-33 EamA-like transporter family (.1) AT1G21890 96 / 2e-22 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039430 [exp] 204 / 7e-64 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 205 / 1e-63 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 204 / 3e-63 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039425 [exp] 204 / 4e-63 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 198 / 4e-60 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 165 / 1e-48 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 119 / 4e-31 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10034877 [exp] 108 / 3e-27 AT5G40230 207 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 107 / 2e-26 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337100 [exp] 198 / 6e-61 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G145800 [exp] 127 / 3e-34 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 114 / 2e-29 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 114 / 6e-29 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 113 / 7e-29 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.003G192500 [exp] 103 / 5e-25 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 103 / 8e-25 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 99 / 2e-23 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 99 / 3e-23 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 99 / 4e-23 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039433 pacid=23175577 polypeptide=Lus10039433 locus=Lus10039433.g ID=Lus10039433.BGIv1.0 annot-version=v1.0 ATGAGTGGAGGAATGCAGTTTCGGAGAGAAGTTGTTGCATTTGCAGCCATGTTGGGTATGCAATTTGCAACAGTTGGGATATTCACTCTCTTCAAGTCTG CAACAATGGAAGGGATGGGCCACTATGTGTTCAGTCCCTATAGTTACGGAATCACCTCAGTTGCTCTTCTCCTTTCTACTCTCATTTCTCACAGAGTACT TAACGTTCCTCCTCTCAGCTTCCCGATAATATGCAGAATCGGTCTTCTAACATTCGCAGGCTCATCTCAGGTAGTAGGATACACAGGACTGTATTACAGT TACCCAATTCTGTCTTCAGCTATTAGCAACCTCAATCCAGCTTTTACATTCATACTTGCTCTCATCTTCAGGATGGAGAAAGTTGTTGTGAGAAAAAGAT CTAGTCTGGCTAAAGTGGTGGGAGCAATTGTGTCAATCACAGATGCATTTATAATCACACTTTACAAAGGTCTTCCGATTGTCGTTACTCCATCTCCATC GTCATCAAAACTTGTTCATTCCACAACAACACAAAAATGGCTTCTTGGTTCAATCTTACTCACTCTCCAGTATATACTAGGTTCTTTGTGGTCCATTTTG TTGGTGCAGGTGTCACGCTCATCGCTGAGGGAACATCATCAGCGCATGGATACTGACCTCGAAGCAAGCAAGGGTCTATGTGGATGGGGTCTGATAACAT TGAGTACGCAAATCTCCCATCATTTTGTCTCGATTATGGTTGTTTTTGTCACAATGCTCAAATTGGGATCGTTGGATGCTTCGCCTTATGAAGAAGGTAA AGTGTCACAACTGATTGCTCCTGTTCCGACCAAACTTATGGAGGCTATGTCGACCTCCGGTGAGTCTCCATATGAGCCGGAAGGGCCGTGGCATATGATT GCCCAAAATCCTGGAAGCTAA
AA sequence Show only first row Show all	>Lus10039433 pacid=23175577 polypeptide=Lus10039433 locus=Lus10039433.g ID=Lus10039433.BGIv1.0 annot-version=v1.0 MSGGMQFRREVVAFAAMLGMQFATVGIFTLFKSATMEGMGHYVFSPYSYGITSVALLLSTLISHRVLNVPPLSFPIICRIGLLTFAGSSQVVGYTGLYYS YPILSSAISNLNPAFTFILALIFRMEKVVVRKRSSLAKVVGAIVSITDAFIITLYKGLPIVVTPSPSSSKLVHSTTTQKWLLGSILLTLQYILGSLWSIL LVQVSRSSLREHHQRMDTDLEASKGLCGWGLITLSTQISHHFVSIMVVFVTMLKLGSLDASPYEEGKVSQLIAPVPTKLMEAMSTSGESPYEPEGPWHMI AQNPGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039433 [exp]	0	1
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10015442 [exp]	4.0	0.8696
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10025959 [exp]	9.7	0.8505
AT3G06880			Transducin/WD40 repeat-like su...		Lus10036201 [exp]	12.6	0.8322
AT1G51110			Plastid-lipid associated prote...		Lus10012100 [exp]	15.2	0.8604
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	16.4	0.8586
AT3G44800			Meprin and TRAF (MATH) homolog...		Lus10013547 [exp]	16.5	0.8314
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	16.9	0.8231
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10038652 [exp]	17.9	0.8225
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	22.5	0.8510
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	23.1	0.8424

Compare expression of checked genes

Lus10039433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.