Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039434 pacid=23175509 polypeptide=Lus10039434 locus=Lus10039434.g ID=Lus10039434.BGIv1.0 annot-version=v1.0 ATGGACGTCTCTTCTGCTCCTTCCCCTTCAAACAGTCATGTCCAATCCCTAGAAAACCAAGCTTCCAAGACCTCAACAGAGTTTCAATCCGAGAGTATCA AACAGCAAACCAACAAATCTGATGCTGTGTTGGGTAAAAGTGGGACGTCCTTACTATCTTTAGAAGGATCTACACCAAGTTTCAAGAAGCAGATTCCTAA ATCTAAGGGGAAGAACGTCTCCAAAATTGCAAGTATGGTTGACACTACCGGAATTGTTCATTCGAAGACTTCTATCAAGCGACGCAAGAAGGTTGTTGTT ACCCCTTCGTGCGATTTCACCTCTCCAGTGGAAGCTTCACAGTGGCACCAACAGCTGAGAGATGCCCCAATCCTGGAGTTTGATGATGATGATGATTTTG ACTCTGATGATGTTTGA
AA sequence Show only first row Show all	>Lus10039434 pacid=23175509 polypeptide=Lus10039434 locus=Lus10039434.g ID=Lus10039434.BGIv1.0 annot-version=v1.0 MDVSSAPSPSNSHVQSLENQASKTSTEFQSESIKQQTNKSDAVLGKSGTSLLSLEGSTPSFKKQIPKSKGKNVSKIASMVDTTGIVHSKTSIKRRKKVVV TPSCDFTSPVEASQWHQQLRDAPILEFDDDDDFDSDDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039434 [exp]	0	1
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	11.2	0.6906
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	11.9	0.7283
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	13.9	0.7179
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	16.6	0.6284
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	23.2	0.6898
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	24.1	0.6986
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	28.8	0.7119
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	38.7	0.6562
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	42.4	0.6964
AT5G41650			Lactoylglutathione lyase / gly...		Lus10024719 [exp]	47.1	0.6270

Compare expression of checked genes

Lus10039434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.