Plant FIBer expression Database

Lus10039436 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01420 905 / 0 PADOX-1, ALPHA-DOX1, DIOX1 plant alpha dioxygenase 1, alpha-dioxygenase 1, Peroxidase superfamily protein (.1)
AT1G73680 794 / 0 ALPHADOX2 ,ALPHA DOX2 alpha dioxygenase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G106400
[exp]
923 / 0 AT3G01420 925 / 0.0 plant alpha dioxygenase 1, alpha-dioxygenase 1, Peroxidase superfamily protein (.1)
Potri.012G049500
[exp]
832 / 0 AT1G73680 1007 / 0.0 alpha dioxygenase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0617 Peroxidase PF03098 An_peroxidase Animal haem peroxidase
Representative CDS sequence
>Lus10039436 pacid=23175557 polypeptide=Lus10039436 locus=Lus10039436.g ID=Lus10039436.BGIv1.0 annot-version=v1.0
ATGTCATCATTGTTTGCTGGGTATTGTAAAACCTTGATCACAAAGTTTATCCACCAGGATTTTCATGGGGTCGTCGGAAAGATGAAGCTGCTCGATGCTT
TCGTGTTTTTAATTGTGCATTCCATGGATAAGAAGGGTCTATGGCACAGGCTGCCTGTGTTTATGGGTCTCATTTACCTGGAGCTCCGTAGACATCTTCA
TCAGTCATACAATTTGATCAATGTTGGGAAATCTTCAAATGCTACTGCTGGTGTTGGTGGTTTCAATCCAGCTGATTACCCTTATAGGACAGCAGATGGG
AAATATAATGATCCCAAGGATCAAAATGCAGGCAGCCAATACACTTTGTTTGGTAGGAACGTTATGCCAGTTGATCAGGATGATAAGATTTTAAGACCAC
ATCCTGCAGAAGTGGCTAGCAAACTGCTGTCAAGAAGAGAATACAAGGATACTGGAAAGCAATTCAACATGGTTGCAGCTTCCTGGATTCAGTTCATGAT
CCATGACTGGATTGATCATTTGGAGGATACCAAACAGATGGAACTGATTGCACCCAAAGATATCGAAAGTCAGTGCCCCCTTAGTTCCTTCAAGTTCTAT
TTGACCAAGCAAGTTACAACTGGGTTGGATGATATCAAGACTGGTACAATAAATGCACGTACATCCTGGTGGGATGGAAGTGGGATTTACGGAAGTGATG
CGAGCAAGTTGGAGAAAGTGAGGGTGTTCAAAGATGGGAAGCTCAAGTTAGGTGAGAATGGGCTTCTGGTGGTTGATGAAGATGGGTTTGCTGTATCTGG
AGAAATTCGTAATTCTTGGTCTGGAGTCTCCGCCATCCATGCCCTTTTCACTATGGAGCATAATTCTGTCTGTGACATGCTCAAGAAAGAAAACCCAGGG
ATGGGAGATGAAGAGTTATACAGGCGTGCAAGACTTGTGACCTCTGCAGTGATTGCAAAGGTTCATACCATTGACTGGACTGTTGAGCTTCTCAAAACTG
ATACATTACTCGCCGGAATGCGAATCAACTGGTATGGAGTACTGGGGAAATGGTTCAAGGACAAATTTGGACATGTGGGTGATCCAAGACTGGGAGGACT
AGTCGGTTTGAAACAGCCACAAAATCATGGAGTGCCATACTCATTGACTGAGGAATTTGTGAGTGTATACAGAATGCACCCAATTTTGCCTGATGAATTC
CTCATCAGGGACATTTCTTCGATTACCAACAAGTCTCTTCCGGTTGTTGAAAAGCTGCCCGTTCAAAACTTATTAGGCTCAAATGGGGAAAAGGCATTGT
CCAAAATTGGATTCACTAAGCAAATGGTCTCCATGGGTCACCAAGCATGTGGTGCTCTTGAGCTCTGGAACTACCCCAATTGGCTTAGGAATGTAGCACC
CCATGATCCTAATGGCAGACCAAGGCCTGATCATGTCGATCTACCAGCCCTTGAAGTATATAGGGACAGAGAGAGGAAAGTTGCAAGGTACAACGAGTTC
CGAAGAAGGATGCTGATGATACCAATATCGAAATGGGAAGATCTCACGGATGACAAGGAAGCTATTCGGGTGCTTACTGAAGTGTACGGTGATCGAATGG
AAGAGCTAGACCTTCTAGTTGGAATGATGGCCGAGAAAAAGATCAAAGGGTTTGCTATAAGTGAAACTGCATTCTTCATATTTGTCATGATGGCTTCCAG
GAGGCTGGAGGCGGACAGGTTCTTCACGAGTTATTTCAACGAGGAAACATACACAAAGAAGGGTATGGCATGGGTGAACACAACTGAGTCTCTTAAAGAT
GTGATTGATCGCCACTATCCTGGAATGACTGAGAAATGGATGAAGTCTACAAGTGCATTCACTGTTTGGGATGCACCTCCTGAACCTTATAATCCTATTC
CTCTTTACCTGCGGATTCCATGA
AA sequence
>Lus10039436 pacid=23175557 polypeptide=Lus10039436 locus=Lus10039436.g ID=Lus10039436.BGIv1.0 annot-version=v1.0
MSSLFAGYCKTLITKFIHQDFHGVVGKMKLLDAFVFLIVHSMDKKGLWHRLPVFMGLIYLELRRHLHQSYNLINVGKSSNATAGVGGFNPADYPYRTADG
KYNDPKDQNAGSQYTLFGRNVMPVDQDDKILRPHPAEVASKLLSRREYKDTGKQFNMVAASWIQFMIHDWIDHLEDTKQMELIAPKDIESQCPLSSFKFY
LTKQVTTGLDDIKTGTINARTSWWDGSGIYGSDASKLEKVRVFKDGKLKLGENGLLVVDEDGFAVSGEIRNSWSGVSAIHALFTMEHNSVCDMLKKENPG
MGDEELYRRARLVTSAVIAKVHTIDWTVELLKTDTLLAGMRINWYGVLGKWFKDKFGHVGDPRLGGLVGLKQPQNHGVPYSLTEEFVSVYRMHPILPDEF
LIRDISSITNKSLPVVEKLPVQNLLGSNGEKALSKIGFTKQMVSMGHQACGALELWNYPNWLRNVAPHDPNGRPRPDHVDLPALEVYRDRERKVARYNEF
RRRMLMIPISKWEDLTDDKEAIRVLTEVYGDRMEELDLLVGMMAEKKIKGFAISETAFFIFVMMASRRLEADRFFTSYFNEETYTKKGMAWVNTTESLKD
VIDRHYPGMTEKWMKSTSAFTVWDAPPEPYNPIPLYLRIP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G01420 PADOX-1, ALPHA-... plant alpha dioxygenase 1, alp... Lus10039436
[exp]
0 1
AT3G18400 NAC ANAC058 NAC domain containing protein ... Lus10009669
[exp]
2.4 0.8965
AT1G68850 Peroxidase superfamily protein... Lus10013065
[exp]
5.2 0.9036
AT3G26040 HXXXD-type acyl-transferase fa... Lus10021392
[exp]
7.2 0.8373
AT5G14230 unknown protein Lus10036989
[exp]
8.5 0.8535
AT1G20160 ATSBT5.2 Subtilisin-like serine endopep... Lus10032096
[exp]
8.6 0.8985
AT2G23540 GDSL-like Lipase/Acylhydrolase... Lus10016918
[exp]
9.9 0.7996
AT3G26040 HXXXD-type acyl-transferase fa... Lus10021391
[exp]
10.5 0.8163
Lus10013619
[exp]
14.5 0.8365
AT1G49960 Xanthine/uracil permease famil... Lus10006134
[exp]
15.3 0.8114
AT5G58860 CYP86A1 "cytochrome P450, family 86, s... Lus10018217
[exp]
15.7 0.8604

Lus10039436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.