Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40190 265 / 1e-91 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) AT3G28140 233 / 4e-79 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039477 [exp] 370 / 3e-133 AT5G40190 266 / 3e-92 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10014523 [exp] 335 / 3e-119 AT5G40190 255 / 1e-87 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10032164 [exp] 333 / 2e-118 AT5G40190 254 / 3e-87 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350300 [exp] 328 / 1e-116 AT5G40190 264 / 3e-91 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.017G073800 [exp] 309 / 5e-109 AT5G40190 247 / 1e-84 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039437 pacid=23175670 polypeptide=Lus10039437 locus=Lus10039437.g ID=Lus10039437.BGIv1.0 annot-version=v1.0 ATGTCACAGGGATATGCAATTGAGCTGTATTTCGACCCAGCACTGGAGAACCAGGTCTTGAAGGCCTGGAACGTCCTAGCTCGCCGCCAAATCAGCACCC AACTCATCGAAATCGAGTCTCGCCCTCACATAACCCTCTATTCTAACCCTTTCATCGACCCCGCCAAGCTGGAGTCTGTAATTAGGAGCTTCGCTTCCAA GCAGGAGCCTCTGCCTTTGTCTCTATCAACAATCGGCTCTCTCCCTAGTGATACCAACGTCCTCTTCCTAGCTCCAACGCCTTCCCTCTCGCTGCTTCAA TTCCATTCCCAGCTCTGCGATGCTATGAAGAAGGAAGGAATTGAGATTGGCGATGAGTATCGCCCTGACTCTTGGCTTCCTTACTGTGCCGTCGCTCAGG ACGTTCCAAAGGCTAGAATGGCGGATGCATTTTGCGTCCTCAGAGACTTGAAGTTGCCTGTTTCTGGGTATGCGATGGACATTGGAATTGTCGAGTTCTC CCCCAACCGTGAATTCTGCTCCTTTATGCTTGGTAATGCCCTAGAATGA
AA sequence Show only first row Show all	>Lus10039437 pacid=23175670 polypeptide=Lus10039437 locus=Lus10039437.g ID=Lus10039437.BGIv1.0 annot-version=v1.0 MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLYSNPFIDPAKLESVIRSFASKQEPLPLSLSTIGSLPSDTNVLFLAPTPSLSLLQ FHSQLCDAMKKEGIEIGDEYRPDSWLPYCAVAQDVPKARMADAFCVLRDLKLPVSGYAMDIGIVEFSPNREFCSFMLGNALE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039437 [exp]	0	1
AT1G32580			plastid developmental protein ...		Lus10011789 [exp]	2.8	0.9209
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10038474 [exp]	3.7	0.9207
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	4.0	0.8933
AT1G32580			plastid developmental protein ...		Lus10023744 [exp]	4.5	0.8931
AT5G19570			unknown protein		Lus10012977 [exp]	5.2	0.8784
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10011434 [exp]	8.9	0.8834
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	10.9	0.8852
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	15.0	0.8712
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	15.1	0.8986
AT2G19790			SNARE-like superfamily protein...		Lus10012924 [exp]	16.0	0.8706

Compare expression of checked genes

Lus10039437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.