Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28150 421 / 1e-145 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT5G15890 299 / 1e-96 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT5G15900 292 / 3e-95 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT4G23790 276 / 5e-89 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G01430 273 / 1e-87 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G01080 270 / 2e-86 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT4G11090 260 / 8e-83 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT1G70230 258 / 6e-82 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT5G51640 219 / 4e-66 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 219 / 9e-66 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039476 [exp] 783 / 0 AT3G28150 428 / 1e-148 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10034087 [exp] 306 / 2e-100 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 305 / 5e-100 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10005952 [exp] 296 / 1e-97 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10029454 [exp] 297 / 6e-97 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10024167 [exp] 284 / 3e-92 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10032367 [exp] 262 / 9e-83 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10033950 [exp] 257 / 5e-81 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10029188 [exp] 252 / 4e-79 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G073700 [exp] 522 / 0 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.011G144100 [exp] 459 / 5e-161 AT3G28150 415 / 9e-144 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.004G105700 [exp] 311 / 2e-102 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.014G095800 [exp] 291 / 8e-95 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.002G168400 [exp] 291 / 8e-95 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105500 [exp] 290 / 3e-94 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 285 / 2e-92 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105600 [exp] 275 / 9e-89 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.003G137800 [exp] 273 / 4e-87 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.001G093800 [exp] 272 / 4e-87 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10039438 pacid=23175532 polypeptide=Lus10039438 locus=Lus10039438.g ID=Lus10039438.BGIv1.0 annot-version=v1.0 ATGGGGAAAGCTCTGCCATTCTTGTTTTCTTCTTTTGCACTAACCACCATTTTCACCTTCTTCCTTCTATACTCCCCTTTGCCCTTTTATCTCACCACTT CTCCTCCTCCTGTAACCAAACAAAAACAACAGCATCAGAAAGATCAGCTTATTAATATTGATGATCATCAATCCGTCTTGTTAAAACCGCCACCGCCTCA CAATCTTAAGGAGGAAGAGAAATGCGACCTGTTCAAGGGTCGGTGGGTGCCTGATCATGAAGGGGCGCGGTACAGTAATTTCAGCTGCAAGACGATTCCA GACTCGAAGAACTGTTTCAGACATGGCAGGAAAGACAAGGACTTCCTCAACTGGAGATGGAAGCCTGATCATTGTGTTCTCCACAAGTTTGATCCAAAAG CATTCTTCGACATTGTAAGAGGGAAAACAATGGCATTTGTTGGGGACTCTGTCGCCAGGAACCATTTTGAATCCCTTCTCTGCCTCCTCTCCCAGGAGGA AGCCCCAGTAAATGGCTATAAGGACGAGGATGACAGGGACATAATCTGGCATTTCCCCAAGCACCAATTCATTCTGAAGGTCATCTGGTCAAAATTCCTC ATCTTCGGAGAAGAAAGATTGGTTAACGGTACATCCACCGACATCCATGACTTGCACCTCGACAAGCTAGACGAAAACTGGGCTCGAGACTTGCATGCCT TAGACTATGTGATCATCTCAGATGTTCACTGGTTCTTCAGGTCAATCTACTTGCATCGGGATAACAAGATGGTGGGCTGCATCTATTGTAACGAACCAAA CGTGACTAACTGGTATGTGAGCTCGGCCATCAAGATGGCACTGAGACTGGCGCTCGAACGAATCAACAGCTGCGGGGAATGCAAGAGCACGGTTACTGTG ATGAGGACATTCTCCCCCTCACATTTCGAGAACGGGGTGTGGAACAATGGAGGGAACTGCAACAGGACGAGTCCCACCCATGAGAAGGAATTGAATTCAG GGGAAGGCGATTATGAGTTGAGAGACAAGCAAATCGAGGAGCTGCAAAGAATCAAAGGAAAGGCCAAGAAAGGGAACAAGTATGGAGTGATGGATGTCAC CAGGGCGATGCGTATGAGACCTGATGGACACCCTGGGGAGTTCTGGGGAAACATATGGATGAAAGGCTATAATGACTGTGTTCATTGGTGCTTGCCTGGA GCTATTGATGTCTGGAATGATTTCTTACTCGCAATCCTCAAACGACTCACCTGA
AA sequence Show only first row Show all	>Lus10039438 pacid=23175532 polypeptide=Lus10039438 locus=Lus10039438.g ID=Lus10039438.BGIv1.0 annot-version=v1.0 MGKALPFLFSSFALTTIFTFFLLYSPLPFYLTTSPPPVTKQKQQHQKDQLINIDDHQSVLLKPPPPHNLKEEEKCDLFKGRWVPDHEGARYSNFSCKTIP DSKNCFRHGRKDKDFLNWRWKPDHCVLHKFDPKAFFDIVRGKTMAFVGDSVARNHFESLLCLLSQEEAPVNGYKDEDDRDIIWHFPKHQFILKVIWSKFL IFGEERLVNGTSTDIHDLHLDKLDENWARDLHALDYVIISDVHWFFRSIYLHRDNKMVGCIYCNEPNVTNWYVSSAIKMALRLALERINSCGECKSTVTV MRTFSPSHFENGVWNNGGNCNRTSPTHEKELNSGEGDYELRDKQIEELQRIKGKAKKGNKYGVMDVTRAMRMRPDGHPGEFWGNIWMKGYNDCVHWCLPG AIDVWNDFLLAILKRLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Lus10039438 [exp]	0	1
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	15.5	0.7814
AT1G22170			Phosphoglycerate mutase family...		Lus10020910 [exp]	36.0	0.7128
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10003172 [exp]	62.0	0.7333
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034655 [exp]	69.3	0.7203
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040099 [exp]	108.2	0.7360
AT1G49470			Family of unknown function (DU...		Lus10021008 [exp]	147.0	0.6955
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10043387 [exp]	183.5	0.7158
AT3G60550		CYCP3;2	cyclin p3;2 (.1)		Lus10042873 [exp]	199.8	0.7040
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	219.9	0.7038

Compare expression of checked genes

Lus10039438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.