Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28180 944 / 0 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) AT4G31590 847 / 0 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) AT2G24630 846 / 0 ATCSLC8, ATCSLC08 CELLULOSE-SYNTHASE LIKE C8, Glycosyl transferase family 2 protein (.1) AT4G07960 748 / 0 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) AT3G07330 738 / 0 ATCSLC6, ATCSLC06 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) AT5G22740 390 / 2e-128 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT5G03760 387 / 4e-127 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 385 / 4e-126 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT1G24070 384 / 1e-125 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1) AT4G13410 383 / 1e-125 ATCSLA15 CELLULOSE SYNTHASE LIKE A15, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039475 [exp] 1236 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10026923 [exp] 846 / 0 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10020120 [exp] 804 / 0 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10007715 [exp] 765 / 0 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10018651 [exp] 756 / 0 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10025886 [exp] 745 / 0 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10038217 [exp] 666 / 0 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10008646 [exp] 393 / 2e-129 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 383 / 1e-125 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009300 [exp] 884 / 0 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 878 / 0 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.005G146900 [exp] 796 / 0 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G114200 [exp] 791 / 0 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G248400 [exp] 763 / 0 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.014G190900 [exp] 740 / 0 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.006G116900 [exp] 404 / 6e-134 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G190701 [exp] 386 / 5e-131 AT3G07330 429 / 5e-148 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.010G234100 [exp] 391 / 7e-129 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G026400 [exp] 386 / 8e-127 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10039440 pacid=23175642 polypeptide=Lus10039440 locus=Lus10039440.g ID=Lus10039440.BGIv1.0 annot-version=v1.0 ATGGCTCCAAGCTCAGTGGTTGTGACGATTGAGAAGCCAAACAACTTGTCAGTAGTACAAATCAACGCCGCCGCCTCACCAGATTCGCCCTTCCTCCCCG TCGACAAACAGAAAGCCGCCAGTCCCAAGCAATTCACCTGGTTCATCCTCCTCAAGCTCTACAGAGCCTTAACTTGCATTTCATGGCTGGCTGTAGGGTT CAAAGCGGTTTTCAGATCGGTCAAGAAAAGGGTAGCTCAATCCGACTCCGGGGAGGAAGTTGAAGAAGCAGACATGGAGCCCAGGAGTAGGGGGAAGCTG TACAAGTTCATCAAGGCGTTTCTCTTCCTCACCATCGTAGCATTCGCGGTGGAAGTAGTTGCGCACTTGAAGAACTGGAATTTGAATCTGGTCCAGCCAT GGGAGGTTCAAGGTCTGGTCCAATGGTCTTACATGGCTTGGCTATCTTTCAGGCTCGATTACATTGCTCCCACTGTCAAGACGCTTTCCCAGTTCTGCAT CGTCCTGTTCCTCATTCAGTCACTTGATCGCCTCGTGCTTTGCATCGGATGCTTCTGGATCAAGCTCAAGAAAATGAAGCCTCGAATTGATGCGGAGGCT TATGATGTTGAGGACCCTCACAGTTTCCCCATGGTTCTTGTTCAGATTCCAATGTGCAATGAAAGAGAGGTTTTTGCTACATCAATTGGTGCAGCCTGCC AGCTAGACTGGCCGAGAGACAGAATCCTAATTCAAGTTCTTGATGATTCGGACGATAGCAATTTGCAGCTTATGATTAATGAGGAGGTCCACTCATGGCG TCAGAAAGGGATCAATATCATCTACAGGCATAGGTTGATCAGAACTGGTTATAAGGCCGGCAACCTTAAGTCGGCAATGGGATGTGACTATGTCAAAGAC TACGAATTTGTCGCCATACTTGATGCCGATTTCCAGCCCAACCCTGATTTCCTCAAACTCACTGTTCCCCACTTCAAGGGGAAGCCGGAGCTGGGATTGG TCCAAGCACGGTGGTCATTTGTGAACAAAGATGAGAACTTGCTGACTAGGCTGCAGAACGTGAATCTGTGCTTCCATTTCGAGGTGGAGCAACAGGTGAA TGGAATGTTCTTGGGATTCTTTGGGTTCAATGGGACAGCTGGTGTGTGGAGAATCAAGGCCCTTGAGGATTCAGGTGGCTGGTTGGAGAGAACAACTGTC GAAGACATGGACATCGCAGTAAGAGCTCACTTGAATGGATGGAAGTTCATCTTCCTCAACGATGTCAAGGTCCTTTGTGAATTGCCCGAATCCTATGGAG CTTACAAGAAACAGCAGCATCGCTGGCATTCTGGCCCTATGCAGCTCTTCCGCCTGTGCCTTCCTACCATATTAAAATCCAAGATCTCAATGTTGAAGAA AGCAAACTTGATCATGCTCTTCTTCCTACTAAGGAAGCTAATTCTACCATTCTACTCATTTACATTGTTCTGTATCATACTCCCACTAACCATGTTCATC CCAGAGGCAGAGCTCCCTCTCTGGGTGATCTGCTACATACCCATTATCATGTCATTCCTCAACATCCTCCCATCCCCAAAATCATTCCCATTCTTGGTCC CTTACCTGCTGTTCGAGAACACAATGTCTGTCACCAAGTTCAACGCCATGGTATCAGGGCTGTTCCAGCTGGGAAGTGCATACGAATGGGTGGTGACCAA GAAGACCGGAAGGTCATCCGAATCAGACTTGCTAGCACTAGCAGAGAGGGAAGAAGAGAAGGCAGCAACAACGACAATGCTGAGAAGGAATTCGGAGTCA GGTCTAGAATTGTTGAGCAAACTCAAGGAAGTAGAGGCAGAGGTGGCAGTGGCTAGTCCAAAGAAGAAGAACAGGCTGTATAAGAAAGAGCTAGTGCTGG CTTCCTTGCTGCTCACTGCTGCAGCAAGGAGTCTGTTGTCAGCACATGGTGTTCACTTCTACTACTTGCTGTTCCAAGGTTTGTCGTTTCTGGTTGTTGG GTTGGATTTGATTGGGGAGCAAGTGAGCTAA
AA sequence Show only first row Show all	>Lus10039440 pacid=23175642 polypeptide=Lus10039440 locus=Lus10039440.g ID=Lus10039440.BGIv1.0 annot-version=v1.0 MAPSSVVVTIEKPNNLSVVQINAAASPDSPFLPVDKQKAASPKQFTWFILLKLYRALTCISWLAVGFKAVFRSVKKRVAQSDSGEEVEEADMEPRSRGKL YKFIKAFLFLTIVAFAVEVVAHLKNWNLNLVQPWEVQGLVQWSYMAWLSFRLDYIAPTVKTLSQFCIVLFLIQSLDRLVLCIGCFWIKLKKMKPRIDAEA YDVEDPHSFPMVLVQIPMCNEREVFATSIGAACQLDWPRDRILIQVLDDSDDSNLQLMINEEVHSWRQKGINIIYRHRLIRTGYKAGNLKSAMGCDYVKD YEFVAILDADFQPNPDFLKLTVPHFKGKPELGLVQARWSFVNKDENLLTRLQNVNLCFHFEVEQQVNGMFLGFFGFNGTAGVWRIKALEDSGGWLERTTV EDMDIAVRAHLNGWKFIFLNDVKVLCELPESYGAYKKQQHRWHSGPMQLFRLCLPTILKSKISMLKKANLIMLFFLLRKLILPFYSFTLFCIILPLTMFI PEAELPLWVICYIPIIMSFLNILPSPKSFPFLVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKTGRSSESDLLALAEREEEKAATTTMLRRNSES GLELLSKLKEVEAEVAVASPKKKNRLYKKELVLASLLLTAAARSLLSAHGVHFYYLLFQGLSFLVVGLDLIGEQVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	0	1
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10023485 [exp]	1.0	0.9621
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10005370 [exp]	2.0	0.9483
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	2.2	0.9389
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	2.4	0.9452
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	3.5	0.9409
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10020521 [exp]	4.5	0.9354
					Lus10019304 [exp]	5.1	0.9307
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	5.5	0.9151
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	6.3	0.9010
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	8.0	0.9359

Compare expression of checked genes

Lus10039440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.