Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039474 [exp] 616 / 0 ND / Lus10039442 [exp] 175 / 1e-51 ND / Lus10010697 [exp] 97 / 2e-24 ND / Lus10029831 [exp] 96 / 2e-22 ND / Lus10004308 [exp] 96 / 4e-22 ND / Lus10029181 [exp] 97 / 8e-22 ND 39 / 0.008 Lus10042237 [exp] 95 / 7e-21 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10004305 [exp] 92 / 5e-20 ND / Lus10026124 [exp] 91 / 5e-20 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039441 pacid=23175719 polypeptide=Lus10039441 locus=Lus10039441.g ID=Lus10039441.BGIv1.0 annot-version=v1.0 ATGGCACCTTTCCAGTTCATTTCCAATGCCACTTTCGTCGCTTCAGCCGACAAAACCACAATCCAAGTATACGAGCTCACGTCGACGTCACCGCACTCAC CCTCAGCCGTCAGAAACACCGATTGGAATAGCCTCGGAACCATCGGCAGCCACAATCACCAGCAGTACGACTCCCTCAAATTGTTCGACGAGGATATCCG AGGACGAGATCTAAAGAATCTGGCCGAAGACCTCTCCCAGTCCCATTTATTCGTCAATCCTCACGGCAATTGCTTCCTAGACGTATCCGCCGGCGAATTC GTGGATCCGGCGTTCGGTGTCCAGTACTTGAGACTGAACGACACCTTCAATTGGTCTCAGTACGGCGTCGTCAAACCCCCTCCGCTGCCTCCCATATGGA CCAGCCGACACGCGCTGCCGTACCGCGGCGAGGCTCCCGAAGAAGAAGTGAACGAAGCAATCGTCGATTACGGGAAGGAACTGAAGGGGAAGGAGGCGAA ATTAGGGGAACTCACCAGCCCATTGGCATCCAAGAAGGCCGAATTGAAATCTGCGAAGAAAGATGTTGAGAAATACCGCAAGTGGTGTTCTGATTTCAAG TACAGGTACAGGGACACGATATCGACGTCGGAGGCGCCGGTGAAGATCCAGAGGAGGCGCGTGAGGGTGCCTAAGTCGACGTTCCGGGTGTCGTCCCCGC CGATCGTGCCGAACAGTCCGGTGGGGTGTAGGGTGCCGTCGTTTAAGGAGGAGACGATCGACGCGTTTTGGTTGTTGGACGAGGAGTGCGGAGGGTTCCC TCTGCCGCCGGCGGTGCAGGTGTGGAGTGCGGACGGGAAGTTCGACGGGGAGAATTGGTGGTTTATAAAGGCGAACAGGAGAGTACAAGGAGGGGAAACG ACGATGTTGGTGTATTACGAGGGGGAATTCGATTACGCAGAGTTTGATAATCCGATGACGTCGAGGAGAGAGAGGGTTCCGGTGCCGTATAAGGTGAAGA ATGGTGAATTCGCGGCGGACAGGAATTTCAGCCTGGGCTATTTCTCCTTTACTTGGGAAGTCAGGGTTGTCTTCACTTACCGATGGTAG
AA sequence Show only first row Show all	>Lus10039441 pacid=23175719 polypeptide=Lus10039441 locus=Lus10039441.g ID=Lus10039441.BGIv1.0 annot-version=v1.0 MAPFQFISNATFVASADKTTIQVYELTSTSPHSPSAVRNTDWNSLGTIGSHNHQQYDSLKLFDEDIRGRDLKNLAEDLSQSHLFVNPHGNCFLDVSAGEF VDPAFGVQYLRLNDTFNWSQYGVVKPPPLPPIWTSRHALPYRGEAPEEEVNEAIVDYGKELKGKEAKLGELTSPLASKKAELKSAKKDVEKYRKWCSDFK YRYRDTISTSEAPVKIQRRRVRVPKSTFRVSSPPIVPNSPVGCRVPSFKEETIDAFWLLDEECGGFPLPPAVQVWSADGKFDGENWWFIKANRRVQGGET TMLVYYEGEFDYAEFDNPMTSRRERVPVPYKVKNGEFAADRNFSLGYFSFTWEVRVVFTYRW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039441 [exp]	0	1
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	1.0	0.9214
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10035231 [exp]	1.4	0.8981
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10032088 [exp]	2.0	0.8709
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10009594 [exp]	3.7	0.8498
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	4.5	0.8671
AT1G45063			copper ion binding;electron ca...		Lus10019405 [exp]	5.7	0.8220
AT4G32020			unknown protein		Lus10001936 [exp]	6.2	0.8765
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	11.2	0.8660
AT5G41590			Protein of unknown function (D...		Lus10017526 [exp]	11.8	0.8257
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10030517 [exp]	12.4	0.8340

Compare expression of checked genes

Lus10039441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.