Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039441 [exp] 185 / 2e-55 ND / Lus10039474 [exp] 184 / 7e-55 ND / Lus10004308 [exp] 135 / 2e-36 ND / Lus10019211 [exp] 105 / 2e-25 ND / Lus10004306 [exp] 97 / 2e-22 ND / Lus10010697 [exp] 80 / 4e-18 ND / Lus10026135 [exp] 82 / 2e-17 ND / Lus10029181 [exp] 78 / 2e-15 ND 39 / 0.008 Lus10042237 [exp] 78 / 2e-15 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039442 pacid=23175621 polypeptide=Lus10039442 locus=Lus10039442.g ID=Lus10039442.BGIv1.0 annot-version=v1.0 ATGGCTCCCTTTGAACTGAGATCCAGAAATCTCTTCGTCTCCTCATCCGACAACGCCACAGTCCACATCTACCAACTGGCGACCGACGACGAAGTTGCAG CCAGCGATTGGAAACACGTAGCCTCCGCCGGACCCCTCGCCAAAACCCAACCCCATTACGATGCCTTGAAGGTGTTCGACAAAATGATCAAAGGCCGCCC GCTCAGGAATTTAGCCGAAGATCTCACCCAATCCCATCTCTTGGTCAACTTGGAAGGCCTCTGTTTCCTCGACGTCAGGAACTTCATCGATCCCATTCTC GGTTTCCAATTCTTACGCCTCCAAGACCTCTTCCTCTGGTCCCACTACGGCGTCTGCAAATCCGCCACCACCACTAACATCACCACCGTGTGGAACCCTC GCGACATCCTCTACGGCGAGGTGGTCGTCGACCACGCGGGTCGAATTGCCGACAAGGACGCCGAGCTGGAGAATCTAATCCACCAGGTGTCGGAGATGGA GGCCCAACTGGATCAAACGAAGAGCGAATTGGATTTCTTCCGTAAGCACTACTGGGGAGCCGTACCAAAGAGCAAGCTAATTTTGGACGCGGACAGAGTC TTGTACGGAAGGCGTCGGAAGCTTCCACCGACAACGTTCGCACGAGTAACGGGGAAGGGAGCCGGGGACAGGTTTAGAGGGATGTCGTTGGATGTGAAGG CGGTGGACAATTTTGATGTGATCGACGGGGAGGATGAGATGGTGGGTCCGGCGCCGGAGTTCAAGGTGGGATGGGATGTAACGAAGGGAGGGGGGAAGTT TGACACGGAGAATTGGTGGTACGTGAGAAGTAGCCATCCGGATGGTGGGTCAACGATGGTTGCGTATTACGAAGGGAGCTTTGACTATGTTGAGTTTTAC AACGGACGCAGTGGGAAAAAGGAGCGAGTTGGTGTGCCTTGTGGCGTGGATGCCAATTTTAAAGCCACGAGGCATCTAAGGCTGGCGTCTCTCTCTTCTC TGCATTTCAGAGTTGTCTTCACTTACATCCCTTCCATTCCATTGATTGACAAATAA
AA sequence Show only first row Show all	>Lus10039442 pacid=23175621 polypeptide=Lus10039442 locus=Lus10039442.g ID=Lus10039442.BGIv1.0 annot-version=v1.0 MAPFELRSRNLFVSSSDNATVHIYQLATDDEVAASDWKHVASAGPLAKTQPHYDALKVFDKMIKGRPLRNLAEDLTQSHLLVNLEGLCFLDVRNFIDPIL GFQFLRLQDLFLWSHYGVCKSATTTNITTVWNPRDILYGEVVVDHAGRIADKDAELENLIHQVSEMEAQLDQTKSELDFFRKHYWGAVPKSKLILDADRV LYGRRRKLPPTTFARVTGKGAGDRFRGMSLDVKAVDNFDVIDGEDEMVGPAPEFKVGWDVTKGGGKFDTENWWYVRSSHPDGGSTMVAYYEGSFDYVEFY NGRSGKKERVGVPCGVDANFKATRHLRLASLSSLHFRVVFTYIPSIPLIDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039442 [exp]	0	1
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	2.4	0.9208
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	4.0	0.9143
AT2G41410			Calcium-binding EF-hand family...		Lus10038970 [exp]	4.0	0.8948
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	4.5	0.8925
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	7.0	0.8950
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10032450 [exp]	7.7	0.8771
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	8.5	0.8951
AT3G59080			Eukaryotic aspartyl protease f...		Lus10007335 [exp]	9.0	0.9018
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	9.0	0.8946
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10012215 [exp]	9.4	0.8917

Compare expression of checked genes

Lus10039442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.