Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14920 97 / 1e-24 Gibberellin-regulated family protein (.1.2) AT1G75750 67 / 8e-15 GASA1 GAST1 protein homolog 1 (.1.2) AT2G18420 66 / 9e-15 Gibberellin-regulated family protein (.1) AT4G09600 60 / 2e-12 GASA3 GAST1 protein homolog 3 (.1) AT1G22690 61 / 3e-12 Gibberellin-regulated family protein (.1.2.3) AT5G15230 48 / 9e-08 GASA4 GAST1 protein homolog 4 (.1.2) AT1G74670 48 / 1e-07 GASA6 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) AT2G14900 47 / 4e-07 Gibberellin-regulated family protein (.1) AT5G59845 43 / 6e-06 Gibberellin-regulated family protein (.1) AT1G10588 42 / 9e-06 Gibberellin-regulated family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017212 [exp] 69 / 9e-16 AT1G75750 107 / 3e-32 GAST1 protein homolog 1 (.1.2) Lus10009421 [exp] 70 / 4e-15 AT1G22690 90 / 1e-23 Gibberellin-regulated family protein (.1.2.3) Lus10034524 [exp] 66 / 1e-14 AT1G75750 94 / 3e-26 GAST1 protein homolog 1 (.1.2) Lus10033145 [exp] 64 / 1e-13 AT1G75750 81 / 2e-21 GAST1 protein homolog 1 (.1.2) Lus10014262 [exp] 64 / 1e-13 AT4G09600 86 / 7e-23 GAST1 protein homolog 3 (.1) Lus10025962 [exp] 64 / 2e-13 AT4G09600 87 / 1e-23 GAST1 protein homolog 3 (.1) Lus10021098 [exp] 57 / 4e-11 AT2G18420 77 / 8e-20 Gibberellin-regulated family protein (.1) Lus10004048 [exp] 55 / 3e-10 AT1G74670 109 / 1e-32 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10024338 [exp] 54 / 7e-10 ND 78 / 3e-20
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350600 [exp] 109 / 5e-30 AT5G14920 103 / 1e-26 Gibberellin-regulated family protein (.1.2) Potri.012G076700 [exp] 94 / 2e-25 AT2G18420 85 / 9e-23 Gibberellin-regulated family protein (.1) Potri.015G071500 [exp] 93 / 6e-25 AT5G14920 90 / 5e-23 Gibberellin-regulated family protein (.1.2) Potri.019G083900 [exp] 77 / 1e-18 AT1G22690 103 / 1e-29 Gibberellin-regulated family protein (.1.2.3) Potri.005G239000 [exp] 71 / 3e-16 AT2G18420 117 / 6e-36 Gibberellin-regulated family protein (.1) Potri.002G022500 [exp] 67 / 5e-15 AT2G18420 99 / 2e-28 Gibberellin-regulated family protein (.1) Potri.005G239100 [exp] 66 / 2e-14 AT1G75750 112 / 1e-33 GAST1 protein homolog 1 (.1.2) Potri.002G022600 [exp] 66 / 2e-14 AT1G75750 110 / 4e-33 GAST1 protein homolog 1 (.1.2) Potri.002G022700 [exp] 63 / 2e-13 AT1G75750 94 / 1e-26 GAST1 protein homolog 1 (.1.2) Potri.013G113400 [exp] 59 / 7e-12 AT2G18420 96 / 2e-27 Gibberellin-regulated family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02704 [flax] [poplar] GASA Gibberellin regulated protein
Representative CDS sequence Show only first row Show all	>Lus10039443 pacid=23175454 polypeptide=Lus10039443 locus=Lus10039443.g ID=Lus10039443.BGIv1.0 annot-version=v1.0 ATGGCATCCAAAGCCTTCTTCTTTCTACTTGCTACTGCTGTTCTAGCTCTTTCTTCTCATGCTGCTGCTGATCAAGATAATCACTTCTTCGATGAGGCTG TTACCACTAAATATGTGAAATCTCCACCACCTCAACTGGCACCGGTAGTGCCGCCGGTGAAGCCACTTCCAAGTCCCTCTCCTCCACCGTCACCGCCGTA CAGCAAGCCACCACCAGCAGCTCCAACTCCACACTACCCACCACCGGTCGCCAAACCGCCTACTCCTGCCCCTGCCCCTGCCCCACTTCCAACGCCACCA CCCCCGATCAGGTCCATTAAAGACTGCGTTCCATTGTGCAGCGAGAGGTGCAAGCTACACTCGAGGCAAAATGTGTGCAACAGAGCATGTATAACTTGCT GTGGTAGGTGCAAATGCGTGCCTCCTGGAACTTATGGGAATAGGGAAAAGTGCGGGACTTGCTACACTGGAATGACCACCCGCTTCAATAAACCCAAGTG CCCTTAG
AA sequence Show only first row Show all	>Lus10039443 pacid=23175454 polypeptide=Lus10039443 locus=Lus10039443.g ID=Lus10039443.BGIv1.0 annot-version=v1.0 MASKAFFFLLATAVLALSSHAAADQDNHFFDEAVTTKYVKSPPPQLAPVVPPVKPLPSPSPPPSPPYSKPPPAAPTPHYPPPVAKPPTPAPAPAPLPTPP PPIRSIKDCVPLCSERCKLHSRQNVCNRACITCCGRCKCVPPGTYGNREKCGTCYTGMTTRFNKPKCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14920			Gibberellin-regulated family p...		Lus10039443 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021157 [exp]	1.0	0.9877
AT3G27360			Histone superfamily protein (....		Lus10013948 [exp]	2.0	0.9861
AT2G20515			unknown protein		Lus10022928 [exp]	2.8	0.9705
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005892 [exp]	3.5	0.9814
AT3G53730			Histone superfamily protein (....		Lus10038481 [exp]	5.7	0.9760
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	5.9	0.9753
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10032379 [exp]	6.3	0.9661
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10040853 [exp]	6.5	0.9717
AT3G12210			DNA binding (.1.2)		Lus10007717 [exp]	8.5	0.9483
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10037371 [exp]	9.2	0.9753

Compare expression of checked genes

Lus10039443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.