Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01380 1197 / 0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) AT5G14930 318 / 3e-95 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G52430 170 / 2e-44 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 89 / 7e-18 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 74 / 7e-13 alpha/beta-Hydrolases superfamily protein (.1) AT3G07400 50 / 2e-05 lipase class 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039473 [exp] 1619 / 0 AT3G01380 1466 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10039472 [exp] 861 / 0 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10009502 [exp] 737 / 0 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10011697 [exp] 585 / 0 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 564 / 0 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10014518 [exp] 551 / 2e-180 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10004841 [exp] 169 / 1e-48 AT5G14930 99 / 4e-25 senescence-associated gene 101 (.1.2.3) Lus10039617 [exp] 166 / 5e-42 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10029534 [exp] 165 / 7e-42 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350700 [exp] 1240 / 0 AT3G01380 1392 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Potri.001G290600 [exp] 563 / 0 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 546 / 7e-179 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.019G005256 [exp] 527 / 1e-171 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 511 / 2e-165 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.007G100600 [exp] 168 / 4e-43 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G068700 [exp] 158 / 8e-40 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G291033 [exp] 127 / 2e-33 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3) Potri.015G069600 [exp] 96 / 7e-20 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G291166 [exp] 82 / 2e-18 AT5G14930 55 / 3e-10 senescence-associated gene 101 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3) CL0028 [flax] [poplar] PF04987 [flax] [poplar] PigN Phosphatidylinositolglycan class N (PIG-N)
Representative CDS sequence Show only first row Show all	>Lus10039444 pacid=23175548 polypeptide=Lus10039444 locus=Lus10039444.g ID=Lus10039444.BGIv1.0 annot-version=v1.0 ATGAGAAGCGGCGACGGGATCTTGGGTGGCAAAGGCGGAGATTGTAGAGTGTCGACCGATGTAGTGAGAAGGAGAAGGAAATGGCTGAAGAGACGGGAGA CATGGCTTGTTATACTTGGAGTCATACTCCATGCTGTGTATATGCTCAGCATCTTCGACATTTACTTCAAGACCCCCATTGTCCATGGCATGGATCCCGT TCATCCTCGCTTCACTGCTCCCGCTAAGCGCCTCGTCCTTCTAGTCGCTGATGGACTACGTGCTGATAAGTTCTATGAGCCGGACTTGGAGGGAAACTAC AGAGCTCCGTTTTTGAGGAATATAATTAGAAACCAAGGTAGATGGGGAGTCTCTCATGCTCGGCCGCCTACTGAATCAAGGCCAGGCCATGTGGCCATAA TTGCTGGGTTTTACGAGGATCCAAGTGCTGTCACAAAAGGATGGAAAGCTAACCCGGTGGAGTTTGATTCAGTTTTTAACCAAAGTAGACATACCTTTTC TTATGGTAGCCCAGATATTGTTCCAATATTCTGTAGTGCCTTACCACATAGTACGTGGAAGAGCTATCCTCACGAGTTTGAAGATTTTGCAACCGATGCT TCCTTTTTGGATGAGTGGTCTTTTGATCAATTTCAGAGCCTTCTGAATAGGTCATACGGAGACCCAAAGTTAAAGGAGTTACTTCATCAGGATAAACTAG TCATATTTCTGCATCTGCTGGGATACTACTATAAGGATAATCGTACAGCTTACATATTTACAGCTGACCATGGAATGAGTGATAAAGGTAGCCATGGTGA TGGGCATCCTACGAACACTGATACTCCCCTTGTTGCTTGGGGAGCTGGAATCAAGTATCCAAGTCGGACATCTGAGACCATCTATTCGGATCATGTTGTA CGCTTTGTTGATGAGCATAAACATGGCACACCAACTCCGTTAGACTGGGGCCTAAGTGGCATAGAGCGAGTGGACGTTAATCAAGCTGATATTGCACCTC TTATGGTTTCAACACTCGTTGGATTACCTTGTCCTGTTAACTCGGTTGGAAACTTGCCCCTAGGCTATATAAGCATGCTTAAGGCAGAAGAAGCTGAAGC TATTGTAGCAAATACAAAACAGATATTAAACCAATTTCTTCGTAAATCTGAGATGAAGCATGCAAGCTCTTTGGACTTCAAGCCTTTTGTACCTCTGTCT AATCACACAGCTTGGCTCGAGCAAATAGAGTCTCTAATATCTGTTCAGGACTATGGAGGTGCAGTGAAGCTATCTGAAGATCTAAGAAGCTTGGCACTTC AGGGACTTCATTATTTTCAGACATATGATTGGCTAATGCTAATGACTATAATCACTCTTGGGTACATCGGCTGGATGCTGTATCTTGTTATCCATGTGCT GCAATCATATGCTTCACTGGCAAGAGACATCATGAAGATGAAACCAGCTGTGTCACGAGAAGATAATTCTGGAAAGGTTTATCTGCTTGGAATTCTGGTC ATGGCCACCATTTGCATTCTCTTGATTGTGGAGCATTCTCCTCCCCTTTATCATGCATATATTGCAATGACTGTGTTTCTCTGGACCAACATACTTGGTG AATATCGGTTCATCAGATCATTATGGAGATACTTAAGTGAGAGAAAGGCCAAGTATCTAAGTATACTTCTGATTGTTTGTTCTGTGTCAATAATCATCCT TGAACTCTTGGTGCACAGCTTCACAGAAAGAAAGCTCTATACTTGGTGTTTCATATCTGTGGGAATCACAGCTCCTGTTTATCTACTGAACAAAGTTCCT TGGAGTTCGTGCATATCTATTTTTGTTTGTGCTACATGTTGGTGTTTGTCCATTTTCACGTTGATGCCAGCTGAAATTCCTGACAATACTAATCTAGTGA TTGCAAGCGGAGTTCTAATAGTTGTGATTGCAGCTGCTGCAAGGTGGCTGGATTTTAACTCCGATGGGAATAAGTACTGGATGAATATATGCTACCATGG GAAAGAGAAACGGAAGTCCCCCATTTTATTCTACATACAGGCTCTTTTGGTCGGATTATCATCAATCATGGTGCCATTGTCAACATCACACAGAACAGAG AAACAAGAACTTCACACATGGCATCAACTGATAAATTGGTTCATTGCAGGTTTCTCCATGATTCTTCCATTTTTCTCAGACAATGGTCTTTTGTCTCGAC TCACATCTATTTTTCTAGGCTTCGCACCCACATTCCTCCTCCTCTCCATTGGATATGAAGCTCTCTTCTACGGCGCACTTTCCCTTGTACTAATGGCGTG GATAATATTTGAGAACAGCCTTCTTCAGTTAACTAGGGTTGAGAAAACGTCATCTTCTGCGATAAACATGGATGTCAATACGATATTTGAAAATGGAGAC AGATTCTTGCAACTTTCGGACATGAGGATCCCATTAACTTTTATGGTTTTGTTCAATGTTGCCTTCTTTGGGACGGGGAATTTTGCAAGTATTGCAAGTT TTGAAATTTCATCTGTGTACCGGTTCATCACAGTGTTCAGCCCGTTTACTATGGCAGCCTTACTCATCTTCAAGTTATTTATTCCATTCATGCTAGTCAT ATTCAACAATGGGTTGGAATTGGCTACTTCTGTGGTCGACTCAGCACTGTTGGACTTATCTTGGAATTCCATCTGGAGCCTTTATGCACAAGTCAATCCT GCCCAACTTCAGCACCAATCTTCCCCTCTCTCTGCTACTTTCAAAATCTTTAAGCAACCTAATTTAACAGTTATAGCTTTTATCACTTTACCCATTTATT CCCCTCAACATCTCCAATCAGATTTGGTTTCATCGGCAACTCTCAAGCAGCAGAACTTTCCACACCTAGATTTCTTGTGTTCAACAGGAAACCCTTCCTT CTCAATTCACTCATCTGCAGTTTCCGGTTTCGGTTTTCTCTTCAACGCTCTCCAAGCTTCCCCACATCAGTTTCTTGTTCAAAGAAACGGTGAAATAGTT CTTGAATCCCCATTAATAGTAACTGGGCATTCACTTGGAGGGTCAATAGCTTCTCTGTTTACACTATGGCTTCTGGACTGTATGAGCCAGCTTCCATCCG AGAAGCCATCAAAGAAGCTAGCCCTCTGCATAACATTTGGGTCACCACTGATTGGAGACTCTGGCCTCCACCGTGGCATCTCCCAGCGCTCCACTTGGAA CTCTTGCTTCCTACATGTGGTCTCCAGCCAAGACCTTCTCCCTAAGCTGTTAGTAGCTTCATCATCAGTTACCAGTCCTCAGCAGCAACAGTACACACCT TTCGGTACCTTTATGCTGTGTTCTGAGCTGGGTCATGCCTGCGTTGAAGACCCACAAGTGGTTTCACTCTTGTTCTGCAAAGCAATGGAATTGGCAACTA CTACCCATTTGGTTTCTAGTGATGGATTGCCTGTTGAACATTATGGGTCGTTGTTGCAACATATAAAGACCAGAGCTTTGTGCCGGGGGAGTTCCCAACT TGGTTTCCCCATTGAAGATTCACTCCAGGCTGGGATTGTCTTACTGCTTCGAGCTATTGGGATTACTCAGTACCAGCAGCAAAACCCTAAGATGATGGAG CTGGCGGAACAACTGGAAAGCAAAGAGAGACAGTCAATGTTGAGGAGGAGTGCGATGAATCCAAGCAGGAAACTTAACGACATAAAGATAAAAATGGCAT TCCTGGAATGGTACAAAAAGGACTGCAAGAACAAAGGAATTGGATACTATGACAGCTACAAGAATCGAAGGGGTACTGCTGACATGGTCATAGCCAAGCA CAAGAAATACCTCACAAACTACTGGAAAGAGTTGGTGGAAGAAGCTGAGAAGAAGCCTCAAAAGGAAGGATCATACATTCGGATGATGTGGCTCTACGCA GGAACCACTTACCGAAGGATGGTCGAGCCACTGGACATTGCCGATTTCTACAGAGATAATGTTAAGCAAAGAAGAACAAGTGTGTACACGAGTGAAGGAA GGTCCAAGCACTACATTCTGCTGGAGAAGTGGCAGAAGGAAGATGTTGCTGGTAAGCCCGAGAGTGCTGATCCGAACAGCAAGAAGAGGAACGTTGATGG CAATTTAACGGATGATTCATGCTTCTGGGCTAATGTGGAAGAGGCTAGAATTTGTTGCGGATTGCTCAAGGATCATGATCATGCGATGTCAGATGAGGGA GAAGAAACGAGGACAAGGGCAGAAGGGTATTTGGTATGGTTTGAAGGTTATGTGATGGAGAATATAAAGAATTATGGAGTGAACCCTGAGGTGTTTCTGG AACGCAGTAGCTTTATGAAGTGGTGGATTGAGTTCGAGGAGATTGTTGTTGGGAAGAGTCATGCTTCCTCACTTGCCGAATTCATGAGGAAGGGCTTGTA CAGGAAGTATGGCTCTCAAGTGTTGTAG
AA sequence Show only first row Show all	>Lus10039444 pacid=23175548 polypeptide=Lus10039444 locus=Lus10039444.g ID=Lus10039444.BGIv1.0 annot-version=v1.0 MRSGDGILGGKGGDCRVSTDVVRRRRKWLKRRETWLVILGVILHAVYMLSIFDIYFKTPIVHGMDPVHPRFTAPAKRLVLLVADGLRADKFYEPDLEGNY RAPFLRNIIRNQGRWGVSHARPPTESRPGHVAIIAGFYEDPSAVTKGWKANPVEFDSVFNQSRHTFSYGSPDIVPIFCSALPHSTWKSYPHEFEDFATDA SFLDEWSFDQFQSLLNRSYGDPKLKELLHQDKLVIFLHLLGYYYKDNRTAYIFTADHGMSDKGSHGDGHPTNTDTPLVAWGAGIKYPSRTSETIYSDHVV RFVDEHKHGTPTPLDWGLSGIERVDVNQADIAPLMVSTLVGLPCPVNSVGNLPLGYISMLKAEEAEAIVANTKQILNQFLRKSEMKHASSLDFKPFVPLS NHTAWLEQIESLISVQDYGGAVKLSEDLRSLALQGLHYFQTYDWLMLMTIITLGYIGWMLYLVIHVLQSYASLARDIMKMKPAVSREDNSGKVYLLGILV MATICILLIVEHSPPLYHAYIAMTVFLWTNILGEYRFIRSLWRYLSERKAKYLSILLIVCSVSIIILELLVHSFTERKLYTWCFISVGITAPVYLLNKVP WSSCISIFVCATCWCLSIFTLMPAEIPDNTNLVIASGVLIVVIAAAARWLDFNSDGNKYWMNICYHGKEKRKSPILFYIQALLVGLSSIMVPLSTSHRTE KQELHTWHQLINWFIAGFSMILPFFSDNGLLSRLTSIFLGFAPTFLLLSIGYEALFYGALSLVLMAWIIFENSLLQLTRVEKTSSSAINMDVNTIFENGD RFLQLSDMRIPLTFMVLFNVAFFGTGNFASIASFEISSVYRFITVFSPFTMAALLIFKLFIPFMLVIFNNGLELATSVVDSALLDLSWNSIWSLYAQVNP AQLQHQSSPLSATFKIFKQPNLTVIAFITLPIYSPQHLQSDLVSSATLKQQNFPHLDFLCSTGNPSFSIHSSAVSGFGFLFNALQASPHQFLVQRNGEIV LESPLIVTGHSLGGSIASLFTLWLLDCMSQLPSEKPSKKLALCITFGSPLIGDSGLHRGISQRSTWNSCFLHVVSSQDLLPKLLVASSSVTSPQQQQYTP FGTFMLCSELGHACVEDPQVVSLLFCKAMELATTTHLVSSDGLPVEHYGSLLQHIKTRALCRGSSQLGFPIEDSLQAGIVLLLRAIGITQYQQQNPKMME LAEQLESKERQSMLRRSAMNPSRKLNDIKIKMAFLEWYKKDCKNKGIGYYDSYKNRRGTADMVIAKHKKYLTNYWKELVEEAEKKPQKEGSYIRMMWLYA GTTYRRMVEPLDIADFYRDNVKQRRTSVYTSEGRSKHYILLEKWQKEDVAGKPESADPNSKKRNVDGNLTDDSCFWANVEEARICCGLLKDHDHAMSDEG EETRTRAEGYLVWFEGYVMENIKNYGVNPEVFLERSSFMKWWIEFEEIVVGKSHASSLAEFMRKGLYRKYGSQVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01380			transferases;sulfuric ester hy...		Lus10039444 [exp]	0	1
AT5G58100			unknown protein		Lus10008552 [exp]	2.0	0.8356
					Lus10029189 [exp]	3.3	0.8196
AT2G36380		ABCG34, PDR6, A...	ATP-binding cassette G34, plei...		Lus10023879 [exp]	10.8	0.8330
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	12.4	0.8119
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	14.1	0.8411
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10025270 [exp]	15.2	0.8067
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	20.0	0.7834
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	27.5	0.8311
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10043357 [exp]	27.7	0.7993
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	38.5	0.7558

Compare expression of checked genes

Lus10039444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.