Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40150 454 / 6e-162 Peroxidase superfamily protein (.1) AT3G28200 435 / 2e-154 Peroxidase superfamily protein (.1) AT5G47000 365 / 1e-126 Peroxidase superfamily protein (.1) AT4G17690 355 / 1e-122 Peroxidase superfamily protein (.1) AT1G24110 344 / 2e-118 Peroxidase superfamily protein (.1) AT4G37520 265 / 2e-87 Peroxidase superfamily protein (.1.2) AT5G14130 259 / 5e-85 Peroxidase superfamily protein (.1) AT4G37530 259 / 7e-85 Peroxidase superfamily protein (.1.2) AT5G67400 253 / 2e-82 RHS19 root hair specific 19 (.1) AT5G51890 251 / 9e-82 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010716 [exp] 382 / 2e-133 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10042144 [exp] 360 / 1e-124 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10004234 [exp] 360 / 1e-124 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10039471 [exp] 354 / 3e-124 AT5G40150 290 / 2e-99 Peroxidase superfamily protein (.1) Lus10014517 [exp] 315 / 4e-109 AT5G40150 280 / 2e-95 Peroxidase superfamily protein (.1) Lus10032170 [exp] 313 / 3e-108 AT5G40150 280 / 2e-95 Peroxidase superfamily protein (.1) Lus10029201 [exp] 273 / 7e-92 AT1G24110 288 / 6e-98 Peroxidase superfamily protein (.1) Lus10031664 [exp] 258 / 2e-84 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10012540 [exp] 258 / 3e-84 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351000 [exp] 462 / 5e-165 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 392 / 2e-137 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 387 / 2e-135 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 324 / 1e-110 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.007G053400 [exp] 267 / 5e-88 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.017G064100 [exp] 266 / 9e-88 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 256 / 5e-84 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.004G052100 [exp] 250 / 3e-81 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.018G089900 [exp] 238 / 7e-77 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.011G062300 [exp] 233 / 7e-74 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10039445 pacid=23175666 polypeptide=Lus10039445 locus=Lus10039445.g ID=Lus10039445.BGIv1.0 annot-version=v1.0 ATGGCCAAACTACCACCAACACCCCCGCCGTCGCTTCTCTTCTTCTTCCTCTGCTTAGCAGCAGTCTCCGAATCCAGGCTTTCCTACAACTACTACGACA AATCCTGCCCCAGATTCACCCAAATCATCCAGGAAACCGTCACCAACAAACAAATCACCAGCCCCACAACCGCCGCCGGCACCCTCCGCCTCTTCTTCCA TGCCTGCTTCGCCAATGGCTGCGACTCCTCTGCCCTTGTCTCATCCACTTCCTTCAATCGAGCCGAGCGCGACGCCGAGATCAACCTATCCCTCCCCGGC GACGCCTTCGACCTTATCATCCGCGCCAAGACCGCCCTCGAGCTCGCCTGCCCAAACACAGTCTCCTGCTCCGACATCCTCGCCGTCGCAACACGAGATC TTGTCACAATGGTCGGCGGCCCTTACTACAACGTCCTCCTCGGCCGCCTCGACTACCGCATCTCCAAGTCTTCCTTCGTCCCCGGGAACCTCCCGCTGCC GTCGATGTCCACCTCGCAGATGATCGCCATGTTCGCGGCCAGGGGATTCTCTGTCCAGGAGATGGTGGCGCTTAGCGGGGCTCACACCATTGGGTTCTCT CACTGTAAAGAGTTCAGCGGGCTGCTCTACAACGGGGGCTCAAGCGGATACAATCCGAGGTTTGCGCAAGCGCTTCAGAAGGCGTGCGCCAATTCAAGGA AGGACCCGTCGGTTTCGGTGTTCAACGACATAATGACTCCCAACAAATTCGACAATGTGTACTACCAGAACTTGCCCAAGGGGCTGGGTTTGCTGGCCTC GGACCACGCCCTGGTTAAAGACAACAGGACGCGGCCAATTGTGGAGATGTACGCTAGGGATCAGAACAAGTTCTTCCATGATTTCGCCAATACGATGCAG AAGCTGAGCGTTTACGGGATCAAGACTGGGAGGAGAGGCGAGATTAGGCACAGGTGTGATGCTATCAACTGA
AA sequence Show only first row Show all	>Lus10039445 pacid=23175666 polypeptide=Lus10039445 locus=Lus10039445.g ID=Lus10039445.BGIv1.0 annot-version=v1.0 MAKLPPTPPPSLLFFFLCLAAVSESRLSYNYYDKSCPRFTQIIQETVTNKQITSPTTAAGTLRLFFHACFANGCDSSALVSSTSFNRAERDAEINLSLPG DAFDLIIRAKTALELACPNTVSCSDILAVATRDLVTMVGGPYYNVLLGRLDYRISKSSFVPGNLPLPSMSTSQMIAMFAARGFSVQEMVALSGAHTIGFS HCKEFSGLLYNGGSSGYNPRFAQALQKACANSRKDPSVSVFNDIMTPNKFDNVYYQNLPKGLGLLASDHALVKDNRTRPIVEMYARDQNKFFHDFANTMQ KLSVYGIKTGRRGEIRHRCDAIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	0	1
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	1.0	0.9565
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10020521 [exp]	2.4	0.9255
					Lus10025731 [exp]	3.9	0.9239
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10005370 [exp]	4.0	0.9100
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	4.9	0.8920
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	5.3	0.8904
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Lus10002036 [exp]	8.0	0.8605
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	8.1	0.8713
AT3G08670			unknown protein		Lus10025209 [exp]	9.5	0.8853
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	11.0	0.8996

Compare expression of checked genes

Lus10039445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.