Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40140 329 / 1e-105 RING/U-box superfamily protein with ARM repeat domain (.1) AT5G65200 273 / 5e-84 ATPUB38 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) AT5G62560 185 / 3e-51 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT3G47820 160 / 2e-42 PUB39 PLANT U-BOX 39 (.1) AT2G23140 94 / 8e-20 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 93 / 1e-19 ARM repeat superfamily protein (.1) AT1G71020 90 / 8e-19 ARM repeat superfamily protein (.1.2) AT1G23030 90 / 1e-18 PUB11 ARM repeat superfamily protein (.1) AT2G28830 87 / 1e-17 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 87 / 1e-17 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039470 [exp] 748 / 0 AT5G40140 438 / 3e-148 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10043464 [exp] 279 / 3e-86 AT5G65200 557 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10034119 [exp] 203 / 6e-58 AT5G65200 562 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10043471 [exp] 93 / 1e-19 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 94 / 2e-19 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10011514 [exp] 92 / 5e-19 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 92 / 5e-19 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 91 / 9e-19 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016565 [exp] 90 / 2e-18 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071200 [exp] 304 / 5e-96 AT5G65200 536 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.012G076400 [exp] 299 / 5e-94 AT5G65200 469 / 2e-160 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.017G073400 [exp] 233 / 8e-71 AT5G40140 328 / 9e-108 RING/U-box superfamily protein with ARM repeat domain (.1) Potri.007G051000 [exp] 93 / 1e-19 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 92 / 5e-19 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 91 / 8e-19 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.001G238500 [exp] 89 / 2e-18 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G165900 [exp] 89 / 3e-18 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.009G029600 [exp] 88 / 6e-18 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G037700 [exp] 87 / 1e-17 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10039447 pacid=23175611 polypeptide=Lus10039447 locus=Lus10039447.g ID=Lus10039447.BGIv1.0 annot-version=v1.0 ATGGGGTTCCCCCAAGCTCTGCAAAGGCTTGAGGTTCACCAGCCGATGGACAACAAGATTCGCCAATCCTTTATCGACGAACAAAACGACAACCACAACT CTAAGTGGCGTGTACAGCAACAGAAGCAACGGTGGAGCATCTTCTCCTCCCGGAGATCCCTCTCTTGGGCTGCTGCATCCTCCCACTCAAAGACAACGCC ACGAAACCAAACCACCATCACCGCCGATAACGACGACGACGACGGCGGATTCATACCTGCAGAATTCCTCTGCCCCATATCCGGGTGTCTAATGGCCGAC CCTGCCATCGTCTCCTCCGGCCATACGTTCGATCGAGCCTGCCTCCAAGCCTGCTACTCTCTCGGATTCTCACCTTCCTTCCCGGATGGCTCAGTCCCTG ATTTCTCCGCCGTAATCCCTAACCTAGCCCTCAGATCCACCATTCTCAAATGGTGTAAGCAGCACTCCCTCAGTCCTCCTAAATCACTCCATTACTCCAC AGCTGAGAACATCGTCAGGGCCAAGATGGCGCGACAGAAACAGAGGAAATTAGAATCGCAGAACAGAGCAATTGGGGAAAATTATCCGATGATTGTTAAT AGTCCAGAGATTCTCGTCTCTTCAAGTTCGGGAGAGTCAGTGAGTTCAACAGGGTCATCTGTCTCGTCGTTGCCAGTTCAATTCGTGACCAGACCCAGAT GTTACTCATCGGGTTCTATGTCCTCCTCGGAGACCGACGAATTCCTAATAAACCCGGAAGAGGAAGAGGAGCTGGTGGCCAAGCTGAACAGCGCCCAAGT GCCTGAGGTTGAAGAAGCCGTGATTTCGCTCAGGAAATTGACGAGAACGAAAGATGAACATAACTCCTGCTGCATCCAGCTCTGTTCGCCACAGCTGCTC TCGGCCTTACGGTCTCTAATCGCTTCCAGGTATACCAACATCCAGGTCAACTCGGTGGCTTGCGTGGTCAACCTCTCGTTGCATAAACAGAACAAGGTCA AGATCGTACGGTCGGGAATCCTCCCGCCTTTGATTGAAGTATTGAAGGGAGGTTTCGCCGAGGCGCAGGAGCACGCAGCCGGCGCCATTTTTAGCTTGGC ACTGGACGAACAGAACAGGACGGCAATCGGAGTTTTAGGGGCTCTGCCGCCGCTTCTGAATCTGCTGCGGTCGGGAAGCGAGCGGACTAGGGATGACTCG TCGTCGGCTTTGTACCACCTGTCGCTGATTCAGAGCAATCGGAGCAAGATGGTGAGAATCGGGTCAGTGGGGGCACTGTTAGGGGGTTTGAAGTCGGGTC ATATGCCGGGTCGGGTACTGTCGATATTAGGCAACTTGGCGTTTTGTAACGATGGGCGCGCAGCGATGTTGGACGGTGGCGGGGTGGAGTGTTTGGTGAG GAGGTTGAGGATTGAGATGGAATCGGAATCGAGTTTGGAGGAGAGCTGTGTGAGTGTATTGTGCTGGTTGAGTCAAGGCGGGTTGAGGTTTAAAGGGTTG GCGAAGGCGGCGGGAGCGGAGGAGGTAGTGGCAGCAGCTGCGGAGAGGTGTCGGGCGGAAGAGACGAGGGAGAAGGCAAAGATGATATTGGAGATGATAC AGCGTAAGGCGGAGGAGGACGTGGCGGAGGAAGTTGATTGGGAGGAGGTGTTGGAGGTGGAAACTCGGTCGGAGTTCAGTTGCAAAACTCGGTGTACAGT CGTCGGTGATCGGAGGGATGAGGCTACCTATACTTGCAACTCGTTCTAA
AA sequence Show only first row Show all	>Lus10039447 pacid=23175611 polypeptide=Lus10039447 locus=Lus10039447.g ID=Lus10039447.BGIv1.0 annot-version=v1.0 MGFPQALQRLEVHQPMDNKIRQSFIDEQNDNHNSKWRVQQQKQRWSIFSSRRSLSWAAASSHSKTTPRNQTTITADNDDDDGGFIPAEFLCPISGCLMAD PAIVSSGHTFDRACLQACYSLGFSPSFPDGSVPDFSAVIPNLALRSTILKWCKQHSLSPPKSLHYSTAENIVRAKMARQKQRKLESQNRAIGENYPMIVN SPEILVSSSSGESVSSTGSSVSSLPVQFVTRPRCYSSGSMSSSETDEFLINPEEEEELVAKLNSAQVPEVEEAVISLRKLTRTKDEHNSCCIQLCSPQLL SALRSLIASRYTNIQVNSVACVVNLSLHKQNKVKIVRSGILPPLIEVLKGGFAEAQEHAAGAIFSLALDEQNRTAIGVLGALPPLLNLLRSGSERTRDDS SSALYHLSLIQSNRSKMVRIGSVGALLGGLKSGHMPGRVLSILGNLAFCNDGRAAMLDGGGVECLVRRLRIEMESESSLEESCVSVLCWLSQGGLRFKGL AKAAGAEEVVAAAAERCRAEETREKAKMILEMIQRKAEEDVAEEVDWEEVLEVETRSEFSCKTRCTVVGDRRDEATYTCNSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40140			RING/U-box superfamily protein...		Lus10039447 [exp]	0	1
AT5G01710			methyltransferases (.1)		Lus10001267 [exp]	2.2	0.8399
AT3G61260			Remorin family protein (.1)		Lus10018840 [exp]	5.7	0.7966
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	6.3	0.7929
					Lus10026314 [exp]	7.7	0.8102
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10014978 [exp]	7.7	0.7866
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10009361 [exp]	8.4	0.7621
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	14.0	0.7859
AT3G15810			Protein of unknown function (D...		Lus10007118 [exp]	16.0	0.7559
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10031990 [exp]	22.2	0.7600
AT4G33640			unknown protein		Lus10020463 [exp]	24.2	0.7655

Compare expression of checked genes

Lus10039447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.