Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28210 201 / 2e-66 SAP12, PMZ STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1) AT3G57480 132 / 2e-38 C2H2ZnF zinc finger (C2H2 type, AN1-like) family protein (.1) AT2G41835 132 / 5e-38 C2H2ZnF zinc finger (C2H2 type, AN1-like) family protein (.1) AT5G48205 64 / 6e-13 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039469 [exp] 318 / 2e-112 AT3G28210 208 / 4e-69 STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1) Lus10007540 [exp] 138 / 2e-40 AT2G41835 354 / 1e-123 zinc finger (C2H2 type, AN1-like) family protein (.1) Lus10012196 [exp] 138 / 4e-40 AT2G41835 357 / 8e-125 zinc finger (C2H2 type, AN1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138500 [exp] 211 / 1e-70 AT3G28210 199 / 4e-66 STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1) Potri.006G052200 [exp] 137 / 9e-40 AT2G41835 360 / 6e-126 zinc finger (C2H2 type, AN1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10039448 pacid=23175682 polypeptide=Lus10039448 locus=Lus10039448.g ID=Lus10039448.BGIv1.0 annot-version=v1.0 ATGTCAGGAGGAACGGAAGCTTTCCCAGATTTGGGTCGCCATTGCCAGCATCAGGAATGCCACCAGCTCGACTTCTTACCTTTCAAATGCGATCGTTGCC AACAGGTTTTCTGCCTAGAACACAGATCGTTCAAGGCCCACACATGCCCAAAATCCGACCTCAACAGCCGCAAAGTGGTGGTCTGCGACATATGTTCGAC CTCCATCGAGACCACCGGCCACGGCCAGGGAGACGAGAAGGCCATCTTGGAGGAGCATGAGAAGTCAGGGGAATGTGATCCCATTAAAAAGAAGAAACCC ACATGTGATGTTCGGAGGTGTAAAGAGATACTCACCTTCTCCAATACATACGTCTGCAAAACCTGTCAGATTAAGGTTTGCTTGAACCATAGGTTCCCCG CCGACCATCAATGCAAGAAAGCCTCTCCCATTGTGGTGGCTAATCCCAGAAGCAGCAGCAACATGTTTTTGCTTGCTTTTGCTTCAAGGAACGCCAAAGA TTGTGCCAAAAGTGAGAAACATCCTCCCCCCTCTTCTTCCAGGGCTCAATCATCTATTAGATCACGTTGA
AA sequence Show only first row Show all	>Lus10039448 pacid=23175682 polypeptide=Lus10039448 locus=Lus10039448.g ID=Lus10039448.BGIv1.0 annot-version=v1.0 MSGGTEAFPDLGRHCQHQECHQLDFLPFKCDRCQQVFCLEHRSFKAHTCPKSDLNSRKVVVCDICSTSIETTGHGQGDEKAILEEHEKSGECDPIKKKKP TCDVRRCKEILTFSNTYVCKTCQIKVCLNHRFPADHQCKKASPIVVANPRSSSNMFLLAFASRNAKDCAKSEKHPPPSSSRAQSSIRSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039448 [exp]	0	1
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	10.0	0.9029
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10007540 [exp]	10.0	0.8908
AT1G13360			unknown protein		Lus10041461 [exp]	13.6	0.9183
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	13.7	0.8868
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	14.5	0.8851
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	15.3	0.9067
AT3G62260			Protein phosphatase 2C family ...		Lus10038058 [exp]	19.5	0.8758
AT3G05170			Phosphoglycerate mutase family...		Lus10031518 [exp]	22.7	0.9169
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	24.0	0.8946
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	26.8	0.8797

Compare expression of checked genes

Lus10039448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.