Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01370 412 / 1e-134 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 283 / 3e-87 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G29750 258 / 8e-78 CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 248 / 8e-74 ATCFM3B CRM family member 3B (.1) AT3G23070 239 / 1e-70 ATCFM3A CRM family member 3A (.1) AT5G16180 188 / 8e-53 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT4G13070 45 / 7e-05 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT2G20020 44 / 0.0002 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT5G54890 44 / 0.0002 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039467 [exp] 628 / 0 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10022091 [exp] 260 / 2e-77 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 258 / 6e-76 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10027610 [exp] 239 / 8e-71 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009031 [exp] 230 / 3e-67 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 226 / 1e-65 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10033576 [exp] 191 / 7e-54 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10017618 [exp] 53 / 2e-07 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10012974 [exp] 46 / 6e-05 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350801 [exp] 473 / 1e-157 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 278 / 2e-85 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 269 / 2e-81 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.017G116700 [exp] 223 / 7e-65 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G148901 [exp] 62 / 1e-10 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.006G163100 [exp] 44 / 0.0002 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10039451 pacid=23175449 polypeptide=Lus10039451 locus=Lus10039451.g ID=Lus10039451.BGIv1.0 annot-version=v1.0 ATGAAGAGGACTCATGAATTGTTGGAGAGGAAAACCGGAGGTTTGGTAGTTTGGAGAACTGGAAGTACAATAATATTGTATAGGGGTGCCAATTACAAAT ATCCATACTTCATAGACGGAAATAAGTCAGATGATGACTCCTCACCTAATGCTGAACAAGGTACACTTGTGAGCGATGGGGACACTAAGACCTTGGAGAA CTTATCATCTGCAATTGATGGGAAATGGGGTAGAAACATTCGACCAACTAGTATGGGTCAACGAAAGATGGTCAAAGGTGTTGGTTTACCTGACCGGGTA CGATTTCAGTTACCAGGGGAGGCACAACTTGCAGAAGAAGCAGACAGCTTGTTAGATGGATTAGGCCCACGTTTTACTGATTCATGGGGATATGATCCAG TCCCTGTGGATGCTGATCTTTTGCCTGCTGTTCTTCCTGGTTACCGTAGACCCTTCCGCTTGCTTCCTTTTGGCATCCAACCTATGCTAATCAATGATGA GATGACCACCTTAAGAAGGCTTTCACGACGTTTGCCTTGCCATTTTGCACTAGGCAAGAACAAGAAACATCAAGGGTTAGCTGCTGCCATCGTCAAGCTC TGGGAAAAATGTGAGATAGCAAAAATTTCTGTCAAGAGGGGAGTACAGAACATCGATAGTGAGTTGATGGCTGAAGAGTTGCAGTGGCTTACTGGAGGTA CTCTGCTTTCAAGGGATATGGAATTCATTGTCTTCTATAGAGGGAAGGATTTTCTGCCTGCTGCTGTGTCTTCTGCCATAACTGACCGAAGAAGAAGCCC TGATGCATGTGATCCAGATGGACCTGATACCCCTAGTAACCAGAGAATCGATATGCCAGAACATCGGAAGCAATGGTTGATTGAGGCAGCCGTGAAAAAG ACTAGTGAGAAATTCGCTGTGACTCTAGATAAGAAAGTAACGGAAGAGAAAAAACTAGCTGAGCTTGAGGAAGCAGAAGATTCTCAACAACCCAAGGTAG AGATGGAAGTTATTTCCGAAGAAGAAAGATACATGCTCAGGAAGGTTGGCTTGAAAATGAAACCTTTCCTACTGATAGGGAAAAATAACATAATGACTGG AGTTGGAAAAACTATAAAATCTCACTTTGAGAGGTATCCACTTGCTATCGTGAATGTAAAAGGCAGAGCAAAGGGAACTTCTGTCCAGGAGGTGGTTTTC CAGTTAGAGCAAGAGACAGGAAGTGTTTTCGTATCCCAGGAACCTAGCAAGGTCATACTGTATAGGGGCTGGGGAGCAGAAGATGAAGCAGGCTTTCGAA AAAAGAAAAGGAAGAAGAGTCAACAGCTCCAATAG
AA sequence Show only first row Show all	>Lus10039451 pacid=23175449 polypeptide=Lus10039451 locus=Lus10039451.g ID=Lus10039451.BGIv1.0 annot-version=v1.0 MKRTHELLERKTGGLVVWRTGSTIILYRGANYKYPYFIDGNKSDDDSSPNAEQGTLVSDGDTKTLENLSSAIDGKWGRNIRPTSMGQRKMVKGVGLPDRV RFQLPGEAQLAEEADSLLDGLGPRFTDSWGYDPVPVDADLLPAVLPGYRRPFRLLPFGIQPMLINDEMTTLRRLSRRLPCHFALGKNKKHQGLAAAIVKL WEKCEIAKISVKRGVQNIDSELMAEELQWLTGGTLLSRDMEFIVFYRGKDFLPAAVSSAITDRRRSPDACDPDGPDTPSNQRIDMPEHRKQWLIEAAVKK TSEKFAVTLDKKVTEEKKLAELEEAEDSQQPKVEMEVISEEERYMLRKVGLKMKPFLLIGKNNIMTGVGKTIKSHFERYPLAIVNVKGRAKGTSVQEVVF QLEQETGSVFVSQEPSKVILYRGWGAEDEAGFRKKKRKKSQQLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039451 [exp]	0	1
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	10.4	0.7795
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	13.7	0.7712
AT3G50430			unknown protein		Lus10022468 [exp]	13.9	0.7730
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10034086 [exp]	14.1	0.7124
AT3G27930			unknown protein		Lus10008782 [exp]	22.6	0.7433
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	26.8	0.7276
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	35.2	0.6934
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	40.6	0.7324
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	45.2	0.6941
AT5G19070			SNARE associated Golgi protein...		Lus10021942 [exp]	55.5	0.7206

Compare expression of checked genes

Lus10039451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.