Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04690 201 / 6e-65 Pyridoxamine 5'-phosphate oxidase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039466 [exp] 318 / 3e-110 AT2G04690 254 / 3e-86 Pyridoxamine 5'-phosphate oxidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470300 [exp] 244 / 7e-82 AT2G04690 276 / 3e-95 Pyridoxamine 5'-phosphate oxidase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039452 pacid=23175575 polypeptide=Lus10039452 locus=Lus10039452.g ID=Lus10039452.BGIv1.0 annot-version=v1.0 ATGAACAATATCAGAGGTGTAGCCATCTGTGTCTTTGTATTCCTGTTGGCGACTTCCGTGCAGGGAAGAAGGCCGTTAGAAGTCAAGAAGCCCGACCCGA ATAATGCTGCTGCAACATCTCGTTGGCTAGTCTCCCAGAACTCTTGGGGAGTCCTCAATACTTTATCAACTGAGTTGGGGGGAGCACCATTCGGGAATGT TGTTTCATTCAGTGATGGAGAACCTGGTAAAGGTGCTGGAGTACCATACTTCTATCTGACAACTCTTGATCCAACTGCGAGAAACGCAATGAAAGACCAG AGGTCATCTTTCACTATCAGTGAGTACCCTTTGGGAACTTGTGGAAAGGCCGACCCAGAGAACCCTACTTGTGCCAAAATTACACTCACCGGAAAGGGTC ATGATTTCCAGATATACAAGCTGGTGATTGAAGACATATTCTTGATAGATTGGTTTGGTGGTCCGAAACCTCTCACAGTTGAGGAATACCTGAAAGCTAA GATAGATATTGCTGCCGACGGCTGCCGTCGAAACCATCGATCAATCAACCAAATCTTCTCATCTCTCCCCATCACCATCAACATCATTCATCTCCCTCAT GGCTCACCGGGCGAGATCTGGCACACAAGCTTCCCTGCAAGAGCCAATCGCAACGGCGGGAGGGAGTCATCAGGTGCAGTCACGCTCTACTGTTCCACAA CCACTCGGCCGCCCGCCGTCAGGGCCACCGGGCTTCGAGTCGTGGCCTCCAGTGCAGCGAGCCTCAACTCCACTGTCGATTGTCTCCGCCATCGCTAA
AA sequence Show only first row Show all	>Lus10039452 pacid=23175575 polypeptide=Lus10039452 locus=Lus10039452.g ID=Lus10039452.BGIv1.0 annot-version=v1.0 MNNIRGVAICVFVFLLATSVQGRRPLEVKKPDPNNAAATSRWLVSQNSWGVLNTLSTELGGAPFGNVVSFSDGEPGKGAGVPYFYLTTLDPTARNAMKDQ RSSFTISEYPLGTCGKADPENPTCAKITLTGKGHDFQIYKLVIEDIFLIDWFGGPKPLTVEEYLKAKIDIAADGCRRNHRSINQIFSSLPITINIIHLPH GSPGEIWHTSFPARANRNGGRESSGAVTLYCSTTTRPPAVRATGLRVVASSAASLNSTVDCLRHR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Lus10039452 [exp]	0	1
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Lus10039466 [exp]	1.4	0.8948
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10022382 [exp]	18.3	0.8741
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	19.5	0.8822
AT3G53630			unknown protein		Lus10025312 [exp]	24.1	0.8699
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10037560 [exp]	25.3	0.8566
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	31.2	0.8643
AT1G27290			unknown protein		Lus10003121 [exp]	40.2	0.8520
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	48.4	0.8492
AT4G19130			Replication factor-A protein 1...		Lus10006887 [exp]	51.7	0.8475
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005659 [exp]	57.7	0.8422

Compare expression of checked genes

Lus10039452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.