Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017936 [exp] 95 / 4e-25 ND / Lus10009436 [exp] 65 / 6e-13 ND 37 / 0.009 Lus10021860 [exp] 57 / 6e-10 AT2G44430 104 / 1e-24 DNA-binding bromodomain-containing protein (.1) Lus10039996 [exp] 50 / 1e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039453 pacid=23175637 polypeptide=Lus10039453 locus=Lus10039453.g ID=Lus10039453.BGIv1.0 annot-version=v1.0 ATGTTGAGCGGCTCTAACCCCCTTTGGTGGGCGATCAGGGTGATCCGGGGCTTGGCACTCCCCATCCTTGAAGTCCTCCTCTTTGATTCCCCCGTCGAAA GCTCTGGGGGCCTCACGTTGTTCCCAGTTTCAGAAAACCTGGAGGCTGCAGTGCTGTCATCCTATCTCGGTCGGCGGCATCGTGTGTGTGGCGGTGTTGG AGACCGCGGCGGGAAGCCTAGTGCCCCTGGCGACCCTGGCGAGGTCCGCCCGTGCGATGGCGAAGTTGTCCCTAAGCCACTCCCTCATTGTTGCGCTAAG AGCTGGCGAGATTATCGAGGAATCAGAACTCGCACGATGGGCCATGAGGAGCTTGATGATGGTGGTGATGGATGGAAGATGAGGGTGATTGAAACAAAAA ACTACAACGACGGTCGTCGACAACAGAAGCTCTATTTTGAAGCGGCAACTAAACAACCTTAG
AA sequence Show only first row Show all	>Lus10039453 pacid=23175637 polypeptide=Lus10039453 locus=Lus10039453.g ID=Lus10039453.BGIv1.0 annot-version=v1.0 MLSGSNPLWWAIRVIRGLALPILEVLLFDSPVESSGGLTLFPVSENLEAAVLSSYLGRRHRVCGGVGDRGGKPSAPGDPGEVRPCDGEVVPKPLPHCCAK SWRDYRGIRTRTMGHEELDDGGDGWKMRVIETKNYNDGRRQQKLYFEAATKQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039453 [exp]	0	1
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	2.4	0.9016
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020251 [exp]	7.4	0.8015
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	8.9	0.8310
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	12.6	0.8603
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10002934 [exp]	15.7	0.8049
					Lus10016424 [exp]	17.3	0.8450
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042097 [exp]	20.1	0.7586
					Lus10031880 [exp]	20.2	0.8613
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	30.3	0.8178
					Lus10031312 [exp]	32.3	0.8599

Compare expression of checked genes

Lus10039453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.