Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 44 / 9e-06 MLP423 MLP-like protein 423 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015339 [exp] 303 / 1e-107 ND 41 / 6e-05 Lus10014508 [exp] 239 / 6e-82 ND / Lus10032178 [exp] 238 / 8e-82 ND / Lus10005608 [exp] 188 / 5e-62 ND / Lus10016840 [exp] 85 / 3e-21 AT1G24020 58 / 5e-11 MLP-like protein 423 (.1.2) Lus10037715 [exp] 81 / 1e-19 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10016839 [exp] 78 / 1e-18 ND / Lus10003187 [exp] 66 / 7e-14 AT5G45860 46 / 1e-06 regulatory components of ABA receptor 5, PYR1-like 11 (.1) Lus10037393 [exp] 49 / 1e-07 AT2G26040 39 / 5e-04 regulatory components of ABA receptor 14, PYR1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G212100 [exp] 107 / 3e-30 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.010G000400 [exp] 106 / 1e-29 AT1G24020 66 / 4e-14 MLP-like protein 423 (.1.2) Potri.010G000200 [exp] 103 / 1e-28 AT1G24020 65 / 1e-13 MLP-like protein 423 (.1.2) Potri.004G021100 [exp] 96 / 1e-25 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.010G000600 [exp] 92 / 2e-24 AT1G24020 67 / 1e-14 MLP-like protein 423 (.1.2) Potri.008G212700 [exp] 92 / 3e-24 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213446 [exp] 92 / 3e-24 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213669 [exp] 92 / 3e-24 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213100 [exp] 84 / 8e-21 AT1G24020 52 / 1e-08 MLP-like protein 423 (.1.2) Potri.008G212300 [exp] 80 / 2e-19 AT1G24020 47 / 5e-07 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10039454 pacid=23175479 polypeptide=Lus10039454 locus=Lus10039454.g ID=Lus10039454.BGIv1.0 annot-version=v1.0 ATGGGAGTGACAAGTGCAACCCACGAGTTCATGTCATCAATCCCAGCAGCAAGGATGTACAAAGCTATTATCGAGGAATCACCTACCATCTTCCCCAACT TCATCCCTAACTACAAGAGTGAGGTTGTTCAAGGCGATGGCGGTGCTGGCAGCATCCTCCAGACCACCTTCCCAGATGAAGGGAACCAAGTGAAGACTGT GAAGCACCGAGTGGAAGCCAAGGATCCGGCCAACTACCACAGCAAGTACACACTGATCGAAGGTGGCGAGTTGAGCGACAACGTAGAATCTGTGGTGAAT GAGGTCAAGATTGAGGCTTCAGGAGAGGGATGTGTTGTGAAAGCAATCAACCATTACCATACAAAGGGAGAAGCAGATAAGGCATTGATCGAGACAGTTG GGCAGCAGACCTTGGGTGTCTACAAGCATTTGCAAGACTATCTCTTGGCCAACCCATCCCTTTGCGCCTAA
AA sequence Show only first row Show all	>Lus10039454 pacid=23175479 polypeptide=Lus10039454 locus=Lus10039454.g ID=Lus10039454.BGIv1.0 annot-version=v1.0 MGVTSATHEFMSSIPAARMYKAIIEESPTIFPNFIPNYKSEVVQGDGGAGSILQTTFPDEGNQVKTVKHRVEAKDPANYHSKYTLIEGGELSDNVESVVN EVKIEASGEGCVVKAINHYHTKGEADKALIETVGQQTLGVYKHLQDYLLANPSLCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	0	1
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	2.8	0.9355
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	5.7	0.9053
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	6.6	0.9333
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10034245 [exp]	7.9	0.9086
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	8.4	0.9142
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10001493 [exp]	8.9	0.8850
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	9.1	0.8477
					Lus10014739 [exp]	9.8	0.9240
AT3G46570			Glycosyl hydrolase superfamily...		Lus10000070 [exp]	10.8	0.8622
					Lus10022267 [exp]	11.0	0.8320

Compare expression of checked genes

Lus10039454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.