Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01330 297 / 2e-96 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1) AT3G48160 259 / 2e-81 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2) AT5G14960 247 / 4e-77 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT2G04650 89 / 1e-18 ADP-glucose pyrophosphorylase family protein (.1) AT1G74910 86 / 5e-18 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT5G22220 51 / 2e-06 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT2G36010 50 / 3e-06 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT1G47870 45 / 0.0001 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005840 [exp] 435 / 6e-152 AT3G01330 202 / 8e-64 E2F-LIKE 2, DP-E2F-like protein 3 (.1) Lus10042941 [exp] 284 / 7e-91 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10032439 [exp] 278 / 2e-88 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10015338 [exp] 81 / 6e-18 AT1G74910 95 / 5e-24 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10042942 [exp] 86 / 1e-17 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10032440 [exp] 85 / 2e-17 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10012422 [exp] 68 / 2e-12 ND / Lus10003602 [exp] 68 / 8e-12 ND / Lus10033151 [exp] 53 / 3e-07 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070300 [exp] 305 / 3e-99 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.012G075300 [exp] 300 / 3e-97 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.012G075500 [exp] 88 / 1e-18 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.015G070500 [exp] 87 / 5e-18 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.004G200800 [exp] 53 / 3e-07 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.009G161900 [exp] 53 / 5e-07 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.016G072300 [exp] 52 / 5e-07 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.006G205100 [exp] 52 / 7e-07 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.002G023400 [exp] 44 / 0.0002 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039455 pacid=23175519 polypeptide=Lus10039455 locus=Lus10039455.g ID=Lus10039455.BGIv1.0 annot-version=v1.0 ATGAGGAAAGAGAATTCAGTTTGTATGTGTCTTCCATCTCCAATGATCTTCAAGTCCCCGTTAGGTAACCTTTCAGAGAGGGCTTATGGTAGTAGGTTAT TTCTGTTTCCAAGTTGTACTCGGAAATGTGAGTGTTCTCAGTGTGTTTTTGCATCAAGGTACCTGAAAGAGGGCAGGCCACATGGTTCAGCTGGAGGTCT TTCCTATTTTAGGGACATTATCATGGAAGACAATCCGTCGCATATCTTTTTGCTCAATTGTGATGTTTGCTGCAGCTTTCCATGGTCTGGCGTGCTTGGC GTTAACGCCTCTTCTTCCTTTGTTGATGTTGATTTCAGTTTCTTGAATTTGTATAACACCGAAGGGGTCGACTCCATTGGACTAGACGATGCCGCTGCCA GATTAGGAGTTGAGCGCCGACGGATTTATGACGTGGTCAACATATTGGAGAGTGTCGGTGTTGTAGCAAGAAAACAGAAGAATCGGTATTCGTGGAGAGG GTTTGGAGCAATTCCACATGCTTTGGAGTGCCTCAAGCAAAAATCCTTGGTGGAGAATTTCAGCGCTGCAAGTTGTCCAAGTTCTACACAGGTTCCAAAA GAGAACGAAGTTGGAGTATCTTCCAACACATTAACTGAAGGGCAGGACAATTGTTCAGCTTCATTAAAATCTGCTGACAGTAAGAGAGAAAAATCACTAT GGCTTCTTACTCAGAATTTTGTCAAGCTTTTCCTTTCTTCAAATGAAGACATGATCACACTTGATACTGCTGCAATGGCTTTGCTGGGTGATGCTGTCAA TTCAACGACTATGAGAACAAAAGTAAGACGACTCTATGACATTGCCAATGTTCTGTCTTCCATGAATCTGATTGAAAAGATTCATCACCCTGAAAGCAGG AAGCCTGCTTTTAGATGGATGGGATGGAGAGGAAACAATGGAGACGTAGACACTGTGAAATTCCAGACAAACAAGAGAACTTTTGGGGCTGATATCACCA ACTTTGCGTCAAAGAGGAACAGGGTGGATTGGATTGATGAGAAGGAAAACACACCAGGTCATAAAAGATTGCAGGGAATGCATAAGGATAGTCATGGAAG CAAGTTGAAGCAAAATATGGAGAGAAAATCTAAGAGCTTTGTTTTTGGTCCGTTCAGTCCTACCGGAATGAACAAAGTAAGCAGCGCAGGAAATAAAAGT ACAAGACATATACAGGATGTGGAGACCCTAGCTTCTACGTGCTATCCACAATACTGCAATGAAGCTATAGGGGAGCTGTTAGGTCACTATGTAGAGGCAT GGAAATCATGGCATGTTGGAGTTTCAGGGAGAGAAAGGCCCGAGCGGGCTCGCTTTCTCACCTCCGTAGTCGCCGGATCTTTACGAGGTCGTCCGAGATG CACACCTGGTCGTATTGTTGCGTGCATGGCTACACTATTTGATGAGAGGAAGCGTATGCTCATTCAGTTTGGATTAGGGAGGCTCGTCGATGTTAATCTA AAACAAATCGACATGAATGTTGTTTCTTGGATTATAGAACAATATGACTATAAGATTGATTCCATCATTACTCTCAATGCAATAAAGGATGCCCTTGATA TATTGGAATCTGATAACGATTGA
AA sequence Show only first row Show all	>Lus10039455 pacid=23175519 polypeptide=Lus10039455 locus=Lus10039455.g ID=Lus10039455.BGIv1.0 annot-version=v1.0 MRKENSVCMCLPSPMIFKSPLGNLSERAYGSRLFLFPSCTRKCECSQCVFASRYLKEGRPHGSAGGLSYFRDIIMEDNPSHIFLLNCDVCCSFPWSGVLG VNASSSFVDVDFSFLNLYNTEGVDSIGLDDAAARLGVERRRIYDVVNILESVGVVARKQKNRYSWRGFGAIPHALECLKQKSLVENFSAASCPSSTQVPK ENEVGVSSNTLTEGQDNCSASLKSADSKREKSLWLLTQNFVKLFLSSNEDMITLDTAAMALLGDAVNSTTMRTKVRRLYDIANVLSSMNLIEKIHHPESR KPAFRWMGWRGNNGDVDTVKFQTNKRTFGADITNFASKRNRVDWIDEKENTPGHKRLQGMHKDSHGSKLKQNMERKSKSFVFGPFSPTGMNKVSSAGNKS TRHIQDVETLASTCYPQYCNEAIGELLGHYVEAWKSWHVGVSGRERPERARFLTSVVAGSLRGRPRCTPGRIVACMATLFDERKRMLIQFGLGRLVDVNL KQIDMNVVSWIIEQYDYKIDSIITLNAIKDALDILESDND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10039455 [exp]	0	1
AT4G24900			unknown protein		Lus10022913 [exp]	4.0	0.7998
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	5.0	0.8382
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	5.5	0.8033
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10021071 [exp]	6.4	0.7322
AT2G28130			unknown protein		Lus10021421 [exp]	8.1	0.7962
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	11.9	0.8030
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	16.4	0.7090
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	19.9	0.7766
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	20.6	0.7542
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	25.6	0.7904

Compare expression of checked genes

Lus10039455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.