Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14950 1488 / 0 GMII, ATGMII golgi alpha-mannosidase II (.1) AT3G26720 275 / 1e-77 Glycosyl hydrolase family 38 protein (.1.2) AT5G13980 272 / 1e-76 Glycosyl hydrolase family 38 protein (.1.2.3) AT5G66150 259 / 8e-72 Glycosyl hydrolase family 38 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015337 [exp] 1761 / 0 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1) Lus10014507 [exp] 1643 / 0 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10032179 [exp] 1362 / 0 AT5G14950 1265 / 0.0 golgi alpha-mannosidase II (.1) Lus10035111 [exp] 271 / 1e-75 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 267 / 2e-74 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10036074 [exp] 236 / 4e-64 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012577 [exp] 235 / 1e-63 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10014259 [exp] 165 / 2e-41 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10025960 [exp] 147 / 2e-35 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350400 [exp] 1564 / 0 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 1541 / 0 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 449 / 3e-149 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.007G056300 [exp] 281 / 4e-79 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.012G106500 [exp] 269 / 4e-75 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 265 / 1e-73 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.014G143600 [exp] 264 / 2e-73 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [flax] [poplar] GH57_38_middle PF09261 [flax] [poplar] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10039457 pacid=23175697 polypeptide=Lus10039457 locus=Lus10039457.g ID=Lus10039457.BGIv1.0 annot-version=v1.0 ATGCCATTGTCTTCTTACATTGGTTCCCGTCGGGGAGGAGGAAGTGGCGGCGGCAGCGGCAGCGGCTGGCCACAGTCGATCCTTCCTACGTCTATTACCA GCAAGTCCAAGCTCATCCCGTCGAGAAAACCTAGGAAACGCGGGGCTCTGATTAACTTCCTTTTCACAAACTTCTTCACCATCTCGCTCTCGATCTCTCT CCTCTTCTTGTTCTTCACCGTCCTGCACTTCGGCTTCCCCAAACCGCTATTTTCTTCTGCGTTCAGTTCGATGCCATCTCCTCCAGTTCGGCAGCGGAAG ACGACTGCCAGGAGAAATTCAATTCAGAACGGTATGAGTAATGGGACAACTGTCGATTTAACTACAAAGGATTTGTACGATAAGATCGAGTTCTTGGATA CGGATGGCGGGCCGTGGAAGCAAGGATGGAGAGTAAGCTATCGAGGGAATGAGTGGGATGATGAAAAGTTGAAGGTTATCGTGATGCCTCATTCGCATAA TGATCCCGGTTGGAAGCTTACTGTTGACGAATACTACGAGAAGCAGTCGAGGCATATACTCGACACAATTGTGGAAACGCTTTCTAAGGATGTTCGGAGG AAGTTCATATGGGAAGAGATGTCTTATCTTGAGAAATGGTGGAGAGATGCATCTGAGGGAAAACGAGCATCTTTCACCAAACTGGTTAAAAATGGCCAGT TAGAAATTGTAGGTGGTGGTTGGGTGATGACCGATGAGGCGAATTCCCACTTCTTCTCGATAATTGAACAGATTACAGAAGGGAACATTTGGTTGAACGA CACTATTGGTATCATTCCGAAGAATTCTTGGGCAATAGATCCCTTTGGTTATTCTTCGACTATGGCATACCTTCTTCGCCGTATGGGGTTTGAGAATATG CTAATTCAGAGGACTCATTATGAGCTTAAGAAGGAACTTGCTTTGCATAGAAATTTAGAGTTTGTTTGGCGGCAGAGTTGGGATGCGGGTGAAACTACAG ACATTTTTGTGCACATGATGCCTTTCTATTCTTATGATATTCCACATACATGTGGGCCAGAACCTGCAATTTGTTGTCAGTTTGATTTTGCCCGAGTGCC TGGCTTCTTCTATGAGTTATGTCCTTGGCACCAGAACCCAGAGGAGACCACTCCAGAAAATGTGCATGAGAGGGCTAAGTTGCTGCTGGATCAATACAAG AAGAAGTCAGTATTATATCGAACAAATACTCTGCTTATTCCTCTTGGGGATGATTTCCGATATGTAACTGTCGATGAAGCTGAGGCCCAGTATCGTAATT ACCAAATGTTGTTTGATCACATCAATTCAAACCCTAGTCTAAATGCTGAGGCAAAATTTGGTACTCTAGATGATTACTTCCAAGCGCTACATGAGGAGTC CGACAGAAAAAATTACTCAGTTCCTGGCGAAATTGGATCTAGTCATATTGGAGGTTTTCCTTCTCTATCTGGGGATTTTTTCACTTATGCTGATAGGGAG CAGGATTATTGGAGTGGCTATTATGTTTCAAGGCCTTTTTTCAAAGCTGTTAATCGGGTCCTAGAGCAAACATTACGTGCTACCGAAATGATGGTGGCTT TGTTCGTTGGCCATTGTCAAAGGCTGCAGTGTGAAAAGTTGGTTATAGGGTTTAGCCATAAGTTGACAGCTGCTAGGAGGAATTTAGCTCTTTTTCAACA TCATGACGGGGTAACAGGCACAGCTAAGGATCACGTTGTTCGGGACTACGGGATGCGAATGCATACTTCTTTGGAAGATCTTCAGATCTTCATGTCTAAG GCTATTGAAGTACTTCTTGGCATGCACTTGGAGAAACTTGATCTAAACCCTGCTAAGTTCGAGGCCGAACAAGTAAGGGCTCAGTACAATGTTCAACCAG TGCATAAAGCCTTAAGTCCTAGTGAAGGTACTGCACAATCGGTGGTTCTATTTAATCCCACTGAGCAAGTGAGAGAAGAAGTCTTTATGGTTGTTGTTAA TAGACCAGATGTCACTGTTCTGGACTCCAACTGGACTTGCGTCCAAAGCCAGGTATCTCCGGAGCTGCAACATGATGGTAACAATATATTTAGTGGGCGG CACCGAGTCCACTGGAAAGCTTCTGTCCCAGCAATGGGACTGGAAACATATTATGTTGCCAACAGCTATGTGGGATGTGAAAAAGCAAAACCAGCCAAAC TAAAGTACGTCTCTCCAAATTCCTTTTCGTGCCCCACTTCATATGCTTGTTCCAAGGCAGAAGGTGATTCGGCAGAAATCCAAAATCGACAGCAAACTCT TATCTTCAACATCAAACATGGGTTATTGCAGAATGTTAAACATAAAAATGGTTCTAGCTATGTTATGGCAGAAGAAATAGGAATGTATTCTAGTGATGGC AGTGGTGCATACTTGTTTAAACCCATTGGTGATGCTAAATCTATCATCCAAAACGATGGGATAACAGTCATCGCAGAGGGTCCACTGATGCAGGAGGTTT TCTCATATCCGAATACAGCGTTTCGAAGGAATCCCGTCTCCCACAGTACTCGTATTTATAATGGAGGCAATACTGTACAGGAGTTTGTTGTAGAAACTGA ATATCATGTTGAGCTTATTGGCGATGAGTTCAATGACCGTGAATTGATAGTTCGGTACAAGACAGATATTGATAATAAGGGGGTATTCTACTCTGATTTA AATGGGTTTCAGATGAGCCGCAGAGAAACATATGATAAGATTCCATTGCAAGGAAATTACTATCCGATGCCTTCATTGGCATTTATCCAAGGATCTAACG GTGACAGGTTTTCTGTCAATTCCAGACAGTCCCTGGGCGTGGCAAGTCTTACAGATGGATGGTTGGAGATTATGGTTGACCGTCGTTTGCTAAGAGATGA TGGGCGTGGGCTTAGGCAAGGGGTGACGGATAACCGCCCTATGAATGTGGTATTTCACCTACTTTTCGAGACCAACATTTCGTCAACATCAAACCCAGTC AGCAATCCAGTTCCCTTGAGCCCATCTCTTCTTTCTCATCGTATAGGTGCACATTTGAACTATCCCTTATTTGCCTGCATTTCAAAGGACCACGAGGAGT TATCTCTTCAGACATACGGCAGATCATTCTCTCCTTTAGCTGCGTCATTGCCTTGTGACTTGCACATTGTGGATTTCAAAGTTGCCAGGCCAGCACTGTT CTCCCGTGAGCTGGTCGGAGATCCTAGGTTTGTTAGAGATCTAGGTTCTGATCTTCCAGAGGCGGCACTGGGATGCTTCCTACTGCCGGACGGGAAGATC AAAGTGCACAAGATTTGCCGATGTACCTGTTAA
AA sequence Show only first row Show all	>Lus10039457 pacid=23175697 polypeptide=Lus10039457 locus=Lus10039457.g ID=Lus10039457.BGIv1.0 annot-version=v1.0 MPLSSYIGSRRGGGSGGGSGSGWPQSILPTSITSKSKLIPSRKPRKRGALINFLFTNFFTISLSISLLFLFFTVLHFGFPKPLFSSAFSSMPSPPVRQRK TTARRNSIQNGMSNGTTVDLTTKDLYDKIEFLDTDGGPWKQGWRVSYRGNEWDDEKLKVIVMPHSHNDPGWKLTVDEYYEKQSRHILDTIVETLSKDVRR KFIWEEMSYLEKWWRDASEGKRASFTKLVKNGQLEIVGGGWVMTDEANSHFFSIIEQITEGNIWLNDTIGIIPKNSWAIDPFGYSSTMAYLLRRMGFENM LIQRTHYELKKELALHRNLEFVWRQSWDAGETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARVPGFFYELCPWHQNPEETTPENVHERAKLLLDQYK KKSVLYRTNTLLIPLGDDFRYVTVDEAEAQYRNYQMLFDHINSNPSLNAEAKFGTLDDYFQALHEESDRKNYSVPGEIGSSHIGGFPSLSGDFFTYADRE QDYWSGYYVSRPFFKAVNRVLEQTLRATEMMVALFVGHCQRLQCEKLVIGFSHKLTAARRNLALFQHHDGVTGTAKDHVVRDYGMRMHTSLEDLQIFMSK AIEVLLGMHLEKLDLNPAKFEAEQVRAQYNVQPVHKALSPSEGTAQSVVLFNPTEQVREEVFMVVVNRPDVTVLDSNWTCVQSQVSPELQHDGNNIFSGR HRVHWKASVPAMGLETYYVANSYVGCEKAKPAKLKYVSPNSFSCPTSYACSKAEGDSAEIQNRQQTLIFNIKHGLLQNVKHKNGSSYVMAEEIGMYSSDG SGAYLFKPIGDAKSIIQNDGITVIAEGPLMQEVFSYPNTAFRRNPVSHSTRIYNGGNTVQEFVVETEYHVELIGDEFNDRELIVRYKTDIDNKGVFYSDL NGFQMSRRETYDKIPLQGNYYPMPSLAFIQGSNGDRFSVNSRQSLGVASLTDGWLEIMVDRRLLRDDGRGLRQGVTDNRPMNVVFHLLFETNISSTSNPV SNPVPLSPSLLSHRIGAHLNYPLFACISKDHEELSLQTYGRSFSPLAASLPCDLHIVDFKVARPALFSRELVGDPRFVRDLGSDLPEAALGCFLLPDGKI KVHKICRCTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	0	1
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	2.8	0.8858
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	4.7	0.8989
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	6.0	0.8922
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10007468 [exp]	7.1	0.8602
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	7.3	0.8424
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	9.1	0.8950
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	10.2	0.8828
AT3G12010			unknown protein		Lus10017227 [exp]	17.5	0.8433
AT5G36210			alpha/beta-Hydrolases superfam...		Lus10021758 [exp]	17.7	0.8250
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	18.5	0.8608

Compare expression of checked genes

Lus10039457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.