Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1752 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT1G02520 933 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT2G47000 931 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G28415 881 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28380 870 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28390 868 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28360 853 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28860 558 / 4e-177 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 525 / 2e-164 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G27940 508 / 1e-158 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005839 [exp] 2325 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 2075 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 1234 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 1224 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10030674 [exp] 1012 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1009 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 1005 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10014427 [exp] 855 / 0 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10035834 [exp] 693 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074000 [exp] 1872 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1797 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 1038 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.014G113500 [exp] 944 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 928 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 921 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 908 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.018G141300 [exp] 707 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 705 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 699 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10039458 pacid=23175588 polypeptide=Lus10039458 locus=Lus10039458.g ID=Lus10039458.BGIv1.0 annot-version=v1.0 ATGGGTGGGGATGAGGAGATCAAAAGTAAAAACAAGGACAAGGGAAGTGATATAGGGTCGATGAAGACGATATTTATGCATGCAGATAAGGTGGATTGCG TTCTCATGATTTTGGGATGCATTGGGTCGATAGGAGATGGATTTTCAACCCCGCTCATGTTATTTGTTACTAGCAAGTTGATGAACAACATTGGTGGCTC CATCAATGGTTCTATGGACGCTTTCCTACACAGCATCAACATGAATTCGCTAGCTCTTTGTTACTTGGCTTGTGGGCAATGGTTCCTCTGTTTCATGGAA GGATATTGTTGGAGTAGAACAGGGGAAAGGCAAGCTTCAAGAATGAGGGCTAGGTATTTGAGAGCTGTCCTCAGACAGGAAGTTGGTTACTTTGATTTGC ATGTAACAAGCACCGCTGAGGTCATCTCCAGCGTCTCTAATGACACTATTGTTATTCAAGATGTTCTCAGTGATAAGGTTCCCAACTTGTTGATGAATTC ATCCACCTTCATCTCCTGCTACCTGGTTGGGCTGGTAATGTTGTGGAGGCTGGCGATTGTTGGGATACCATTCATTGTGATTTTAGTGATCCCTGGAATT ATGTATGGAAGGACTCTGATGGTACTGGCAAGGAAGATGAGAGACGAGTACAACAAGGCAGGGAACATAGCAGAGCAGGCAATCTCTTCAGTCAGAACTG TGTATGCGTTTGTTGCCGAGGACAAAACCACAGCTGCATATTCAGCAGCGTTGGAGTTGTGTGTGAAATTGGGGCTGAAGCAAGGCTTGGCTAAAGGACT TGCCGTGGGAAGTAACGGCGTTGTGTTTGCTGTTTGGTCCTTCATGTGTTACTACGGCAGCAGAATGGTCATGTACCACGGCGCTCAAGGTGGTACCGTT TTTGCTGTTGGAGCTGCTATAGCTGTTGGCGGATTGGCACTTGGGGCTGGATTGTCCAATCTCAAGTACTTGTCAGAAGGGTGTTCAGCTGGGGAACGCA TCCAGCAAGTGATAAAGCGAGTCCCCAAGATAGATGTGGAGAACCCAGATGGGGAAATCCTGGAAAACGTGAGGGGAGAAGTTGAATTCAGGAAGGTCCA ATTTGCATACCCATCAAGGCCAGAGAGCATAATCTTGGCGGATTTTGACCTGAAAGTACCATCAGGGAGGACTGTAGCGCTAGTGGGTGGGAGTGGATCA GGGAAATCAACAGTGATAGCACTGTTGCAAAGATTTTATGATCCATTGGGTGGAGAGATACTGGTTGATGGAGTTGCTATAGACAAGTTGCAGCTTAAGT GGGTGAGGTCTCAGATGGGTCTGGTCAGCCAAGAACCAGCCTTGTTTGCCACGTCCATAAAGGAAAACATACTTTTTGGTAAAGAAGATGCTTCAATGGA AGAGATTATGGAAGCTGCCAAAGCTGCTAATGCTCACACTTTCATATGTCAGTTACCTCAGGGGTATGACACCCAGGTTGGGGAGAGAGGAGTGCAAATG TCAGGAGGGCAAAAGCAGAGAATAGCCATAGCAAGAGCAGTGATCAAAGCACCAAGGATCCTCCTTCTCGACGAAGCAACCAGCGCACTCGACTCCGAAT CAGAAAGGGCTGTTCAGGCAGCACTAGACAAGGCAGCCGTTGGCAGGACCACCATCATTATTGCTCACCGCCTATCCACCGTCCGTGATGCAGACTTCAT CGCAGTGGTACAGAATGGTCAGGTCAACGAACTAGGATCTCACAATGACCTCATCCAAAACCCTGATGGGTTATACACCTCCCTAGTCCACCTTCAACAA ACAGAGAAAGAATACAGCTCCACCAGCTCATCATCGCAAGCACTAGACACCAATAATAATAATAATAATAATAATAATAATAATAATATTACTAACAGTG TTAATGATACGAACAACATTAGCAGCCGGAGAATGTCATTAATGAGCAGGTCAAGCTCTGCCAATTCGGCCATGGCACAGATGAATAATCCAACGGTGGA GGAGGAGCAGGAGTTCCCAGTGCCATCATTCAAAAGGTTGTTGGCACTGAACCTGCCCGAATGGAAGCAAGGAATGATGGGATGTGCTGGTGCAATTCTG TTTGGTGGGATTCAGCCTACCTATGCATTTACAATGGGATCGATGATATCCGTGTTTTTCGTGACGGACCACGCTGAAATGAAGCACAAGGCAGCGTTGT ACGCATTGAGCTTTCTCGGTCTAGCCGCCGCATCCATGATTGTTAACGTGGTTCAGCATTACAACTTCGCTTACATGGGAGAGTGTCTGACCAAGAGGAT CAGGGAACGTATGTTGTCAAAGGTTCTGACTTTTGAAGTTGGGTGGTTTGATCAGGACGACAACTCCAGCGGTGCTGTTTGCTCTAGACTTGCCAAAGAT GCGAATGTGGTGAGGTCGGTGGTTGGGGACCGAATGGCGTTGATAATCCAAACAATCTCGGCGGTGACAATCGCGTGCACGATGGGGCTGGTCATTGCGT GGCGGCTGGCAATAGTGATGATCGCCGTCCAACCAATGATCATCGTTTGCTTCTACGCACGTCGTGCACTCTTGAAAAATATGTCCCATAAGGCCATCAA GCTCCAGGAAGAGAGCGGCAAGGTAGCTGCAGAGGCCGTGTCCAACCTCCGCACCATCACTGCCTTCTCCTCCCAAGACCGTGTCCTTGGAATCCTGGAG AAGGCCCAAATAGGCCCGCGGAAAGAGAGCATCCGTCAGTCATGGTACACTGGGCTAGGCCTCGGCACTTCCCAAAGCCTCATGTCTTTCACTTGGGCAC TCGACTTTTGGTATGGTGGCAAGCTCATCTCCCAGGGCATCATTACTGTCAAAGCCCTCTTCGAGACATTCTTGATCCTTGTCAGCACTGGTCGGGTCAT AGCCGATGCTGGAGCCATGACCTCGGATCTCGCCAAGGGATCCGACGCCGTGGGTTCTGTTTTTGCCATCTTGGATCGGTACACAAAGATCGAGCCAGAC GATGACGAAGGACACAAGCCGGAGAAGATAACGGGCCAGATCGAGCTTCGTGATATCGACTTCGCATACCCGGCTAGACCAGATGTTATGATATTTAAAG GATTCTCGATTCGAATTGAGGCCGGAAAATCTACGGCTCTGGTCGGGCAAAGTGGGTCGGGTAAGTCGACAATCATCGGGCTAATCGAGCGATATTACGA CCCGCTAAGGGGAACCGTGAAGATCGATGGTCGAGACATACGATCGTACCACCTTCGGTCGCTGAGGCAACACTTGGCACTTGTCAGCCAAGAGCCGACT CTATTCGCAGGGACGATAAAGGAGAATATCGCATACGGAGCCGCCGCAACGGTAAATGAATCGGAGATTGTCGAGGCGGCGAAGGCGGCAAACGCTCATG ACTTCGTGGCGGCGCTGAAGGACGGGTACGAAACGTGGTGCGGGGATAGAGGGGTGCAGCTTTCAGGTGGGCAAAAGCAGAGGATTGCGATAGCGAGAGC GATATTGAGAAATCCGGGAGTGCTTTTGTTGGATGAGGCGACAAGTGCGCTAGATAGTCGGTCGGAGAAGGTGGTCCAGGAAGCACTAGAGCGAGTGATG GTTGGACGGACGAGCGTGGTGGTCGCCCACCGACTGAGTACGATTCAAAAATGCGATACGATTGTTGTGTTGGACAAAGGAAAGGTTGTTGAGAAAGGGA CCCACTCGACCTTGTTGGCAAAAGGTCCTACGGGTGTTTACTTTTCTCTGGTTAGTCTACAGAGGACGCCAACCGCAGCAGCAGCAGCAGCAGCTACAAA TATTTTCAACTAA
AA sequence Show only first row Show all	>Lus10039458 pacid=23175588 polypeptide=Lus10039458 locus=Lus10039458.g ID=Lus10039458.BGIv1.0 annot-version=v1.0 MGGDEEIKSKNKDKGSDIGSMKTIFMHADKVDCVLMILGCIGSIGDGFSTPLMLFVTSKLMNNIGGSINGSMDAFLHSINMNSLALCYLACGQWFLCFME GYCWSRTGERQASRMRARYLRAVLRQEVGYFDLHVTSTAEVISSVSNDTIVIQDVLSDKVPNLLMNSSTFISCYLVGLVMLWRLAIVGIPFIVILVIPGI MYGRTLMVLARKMRDEYNKAGNIAEQAISSVRTVYAFVAEDKTTAAYSAALELCVKLGLKQGLAKGLAVGSNGVVFAVWSFMCYYGSRMVMYHGAQGGTV FAVGAAIAVGGLALGAGLSNLKYLSEGCSAGERIQQVIKRVPKIDVENPDGEILENVRGEVEFRKVQFAYPSRPESIILADFDLKVPSGRTVALVGGSGS GKSTVIALLQRFYDPLGGEILVDGVAIDKLQLKWVRSQMGLVSQEPALFATSIKENILFGKEDASMEEIMEAAKAANAHTFICQLPQGYDTQVGERGVQM SGGQKQRIAIARAVIKAPRILLLDEATSALDSESERAVQAALDKAAVGRTTIIIAHRLSTVRDADFIAVVQNGQVNELGSHNDLIQNPDGLYTSLVHLQQ TEKEYSSTSSSSQALDTNNNNNNNNNNNNITNSVNDTNNISSRRMSLMSRSSSANSAMAQMNNPTVEEEQEFPVPSFKRLLALNLPEWKQGMMGCAGAIL FGGIQPTYAFTMGSMISVFFVTDHAEMKHKAALYALSFLGLAAASMIVNVVQHYNFAYMGECLTKRIRERMLSKVLTFEVGWFDQDDNSSGAVCSRLAKD ANVVRSVVGDRMALIIQTISAVTIACTMGLVIAWRLAIVMIAVQPMIIVCFYARRALLKNMSHKAIKLQEESGKVAAEAVSNLRTITAFSSQDRVLGILE KAQIGPRKESIRQSWYTGLGLGTSQSLMSFTWALDFWYGGKLISQGIITVKALFETFLILVSTGRVIADAGAMTSDLAKGSDAVGSVFAILDRYTKIEPD DDEGHKPEKITGQIELRDIDFAYPARPDVMIFKGFSIRIEAGKSTALVGQSGSGKSTIIGLIERYYDPLRGTVKIDGRDIRSYHLRSLRQHLALVSQEPT LFAGTIKENIAYGAAATVNESEIVEAAKAANAHDFVAALKDGYETWCGDRGVQLSGGQKQRIAIARAILRNPGVLLLDEATSALDSRSEKVVQEALERVM VGRTSVVVAHRLSTIQKCDTIVVLDKGKVVEKGTHSTLLAKGPTGVYFSLVSLQRTPTAAAAAAATNIFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039458 [exp]	0	1
AT1G12380			unknown protein		Lus10032194 [exp]	1.4	0.8259
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10040413 [exp]	1.4	0.8269
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	6.9	0.7447
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	9.5	0.7916
AT1G79710			Major facilitator superfamily ...		Lus10041620 [exp]	14.4	0.6871
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	18.7	0.7231
AT1G11050			Protein kinase superfamily pro...		Lus10029711 [exp]	22.3	0.6447
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	22.3	0.6736
AT5G09330	NAC	VNI1, ANAC082	VND-interacting 1, NAC domain ...		Lus10020896 [exp]	22.8	0.6964
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	27.9	0.6966

Compare expression of checked genes

Lus10039458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.