Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28420 41 / 0.0001 Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005837 [exp] 224 / 2e-75 AT3G28420 44 / 2e-05 Putative membrane lipoprotein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039459 pacid=23175535 polypeptide=Lus10039459 locus=Lus10039459.g ID=Lus10039459.BGIv1.0 annot-version=v1.0 ATGGAACGCTACAACAAGTTCAGCTATGAGAGGGAAGCAACAGATGAAAACAATAAGGAGAATGAAGAAAACATGATGATGCTGTACGCAGCAGCAGCAG CAGCAGGAACTTCAACCATAGCAATGGCAGCCTGGGCGAAGAACCTTGGAGCTATTATGTTGATTATGGAACAATGGCGGGTCCAGGTTTTCCTGCTTCT CAACTTCATTCTACTGGCCATCTTCCTCACTTCCCTCCACTCCTCGTCTGCTTCTCCGGTCCATCAAAACCAACCCAGATCGAAATTGGAGATCCCAAGT GAGAAGAGAGCAGAAGAAGCTGGGAGGGTAACAAGGAATGTGACTAATGAGGATACAAAAGAGAAAGGTGGAAACGAAGTGGATCACTATGATGATGATG ATCATCATCATAGCTTGTTGTTGTCCAAAGAGGAATTGAACGAGAGAGCAGAAGCTTTCATTGCAATGTTCAGAGAGCATTTGGTTAGAGATGCAGCAAT TGAAGTCAGAGATTTGGATTTGAGTCTTAAGCAGAGCAGGAGAGTTGTCTGCTGA
AA sequence Show only first row Show all	>Lus10039459 pacid=23175535 polypeptide=Lus10039459 locus=Lus10039459.g ID=Lus10039459.BGIv1.0 annot-version=v1.0 MERYNKFSYEREATDENNKENEENMMMLYAAAAAAGTSTIAMAAWAKNLGAIMLIMEQWRVQVFLLLNFILLAIFLTSLHSSSASPVHQNQPRSKLEIPS EKRAEEAGRVTRNVTNEDTKEKGGNEVDHYDDDDHHHSLLLSKEELNERAEAFIAMFREHLVRDAAIEVRDLDLSLKQSRRVVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	0	1
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	1.0	0.9248
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	1.4	0.8781
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	5.5	0.8617
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	5.7	0.8306
AT2G16640		ATTOC132, TOC13...	multimeric translocon complex ...		Lus10034170 [exp]	7.5	0.8341
AT5G65980			Auxin efflux carrier family pr...		Lus10035978 [exp]	10.5	0.7978
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	11.0	0.8348
AT1G12330			unknown protein		Lus10004335 [exp]	17.5	0.7733
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	17.9	0.8244
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10016722 [exp]	19.7	0.8245

Compare expression of checked genes

Lus10039459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.