Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28455 56 / 5e-12 CLE25 CLAVATA3/ESR-RELATED 25 (.1) AT1G69970 49 / 1e-08 CLE26 CLAVATA3/ESR-RELATED 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005836 [exp] 155 / 4e-50 AT3G28455 49 / 3e-08 CLAVATA3/ESR-RELATED 25 (.1) Lus10010735 [exp] 48 / 2e-08 AT1G69970 66 / 3e-15 CLAVATA3/ESR-RELATED 26 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074600 [exp] 76 / 1e-19 AT3G28455 67 / 3e-16 CLAVATA3/ESR-RELATED 25 (.1) Potri.010G039800 [exp] 54 / 6e-11 AT1G69970 72 / 8e-18 CLAVATA3/ESR-RELATED 26 (.1.2) Potri.008G191500 [exp] 48 / 1e-08 AT1G69970 64 / 2e-14 CLAVATA3/ESR-RELATED 26 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039460 pacid=23175446 polypeptide=Lus10039460 locus=Lus10039460.g ID=Lus10039460.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGGAGTAGCAGGATTTTCAGCATGATCTCTAGGACTGTGTTGTTGCTGGGGGTAATTTGGTTCTTGTATGTTGGAGTTGTAGCAGCAAGCC ATGCTGCAAACAGAAAACTGCAAAGAAATGCAGTTTCATCAACGGGAAATCACCATTCTCATCAAAAATTGGATCTCCATTATGTGAGCAAGAGAAGAGT GCCCAATGGACCTGACCCGATTCATAACAGGAAAGCATCCCAGTCTGGACATCGACCAGGCCGAACATAA
AA sequence Show only first row Show all	>Lus10039460 pacid=23175446 polypeptide=Lus10039460 locus=Lus10039460.g ID=Lus10039460.BGIv1.0 annot-version=v1.0 MGKGSSRIFSMISRTVLLLGVIWFLYVGVVAASHAANRKLQRNAVSSTGNHHSHQKLDLHYVSKRRVPNGPDPIHNRKASQSGHRPGRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	0	1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	1.0	0.8932
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026067 [exp]	1.4	0.8820
AT5G02440			unknown protein		Lus10023770 [exp]	2.0	0.8763
AT4G37810			unknown protein		Lus10011591 [exp]	3.3	0.8088
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	6.7	0.8781
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	8.8	0.8386
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040716 [exp]	10.6	0.7851
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	11.0	0.8540
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	12.6	0.8001
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	12.7	0.8371

Compare expression of checked genes

Lus10039460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.