Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59650 442 / 3e-151 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 424 / 2e-144 Protein of unknown function (DUF1336) (.1) AT3G29180 321 / 1e-103 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 307 / 2e-98 Protein of unknown function (DUF1336) (.1) AT1G13970 282 / 6e-89 Protein of unknown function (DUF1336) (.1) AT5G24990 47 / 1e-05 Protein of unknown function (DUF1336) (.1) AT5G25010 44 / 0.0002 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005831 [exp] 909 / 0 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10036683 [exp] 398 / 1e-133 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 392 / 2e-131 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10026633 [exp] 290 / 5e-92 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 286 / 9e-91 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 278 / 9e-88 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10000174 [exp] 162 / 2e-47 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 117 / 4e-29 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074800 [exp] 545 / 0 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.010G040100 [exp] 454 / 4e-155 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G190500 [exp] 436 / 5e-148 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 316 / 2e-101 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.010G163100 [exp] 295 / 7e-94 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 47 / 2e-05 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 44 / 0.0003 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10039463 pacid=23175681 polypeptide=Lus10039463 locus=Lus10039463.g ID=Lus10039463.BGIv1.0 annot-version=v1.0 ATGGGTGGTTGTGCTTCGGCGCGGAGAGGGTGTGTTGTCTTCCCTTTCCCATCCAAGAGGAAGGTTAATGTTGAGGACAAGAAGAAGAATGACAATGGAG AAGGAGGCCGCCGGAGGAGAAAATCCCGTAGGAGGATTATCAAGCGCAGGTTCTCATCTCGCAAGGTTGAAACTGCTGATCCTTCTCGCCTAACTGATCG GGCTTTCTCTAATCCCGTGTTTCAAGGAAGCATGGATGGTACTTGGTGCGATGCTACCTCAGTGCTTGAATCTGAATGGGATGATGAGTTTTATAGTGTT TATGAAGATGGGTCTGTCATTGACTCTTATGAAAATGGATCTAGTATTGGCGTCCATTCTCCTAGGGATTTAAGCGCAAGGGATTATCAACATAATGCTG GTCTTGCTCCTGATAATGTTCTCCCCAATTCAACTGGAAATGGCCCCAGTGGTAGCAGTACGGCAATGAATCTGCCGCCCAAACACCCTAATTCTTCATT CAAACTGAATGACACTCACAAGGAAGTCAATTCTGCTTCCGCAGAGGAAGTTTCTTGTGTCAGTGTTGTAGGAGATGCGAGAGGAGCAGCTGATAGTCAT TGCGGGGTTCTACAAAATAACTGCTTACCTTGTCTTTCATCAACGGTTCCCACTGTGGAAAAGAAAAAATCCATTAACTCGGATACTGCAAGCTCAAAGA AGAAATCTATGCTCAGGCTATCGTTTAAATGGAGAGAAGAACACACTCCTACATTATTTGCCCCCAAGGGACTTTCACAAAGACCACTTGCTGGTTCTAC TTTCCCCTACTGCCCGGCTGATAAGAAGATCTCTGGTTGCTGGTCACCTATTGAGCCAAGTACTTTCAAAGTGAGGGGAAGAAACTACTTTAGGGACAAG AAGAAAGAGCCTGCTCCTGAATGTGTTGCATTTTCCCCTTTTGCTGCTGACATTTTCTTATCTCAGAGGAAAATTCCTCATATCGCTCGATTTGTCGAAC TTCCTACATTTAGTTCATATGATGAAGTCCCAGCTGTTCTAGTTGTTAATGTTCAGGTACCACTATATCCTGCCTCAATTCTACAAGGTGAAAATGATGG AGAGGGAATGAATTTGGTTATGTACTTTAAGCTATCAGAGAGTTACTCAAATGAGCTTCCCCTCCATTTCCGAGAAAACATCATGAAACTTATCAATGAT GAGGTTGAAAGAGTTAAAGGTTTCCCACTCGATACAATTGCACCATTTAGGGAAAGGTTGAAAATCCTTGGCAGACTAGCAAACGTGAATGAGCTTCAAC TAGGTGCTACTGAGAAGAAGCTTGTGAATGCCTACAATGAGAAACCTGTTCTCTCTCGCCCGCAGCACGAGTTTTACTTGGGGGAGAACTACTTTGAGAT CGATTTGGATATGCACAGATTCAGCTACATCTCTAGGAAAGGGTTCGAAACATTTCACAACAGATTGAAGTACTGTGTATTGGACTTTGGCCTCACGATT CAGGGATACAAGTCAGAAGACTTACCTGAACATATGCTGTGCTGTATGCGGCTAAATGAGATTGACCACACAAAGTACAGCCAACTTGGGTGCTGA
AA sequence Show only first row Show all	>Lus10039463 pacid=23175681 polypeptide=Lus10039463 locus=Lus10039463.g ID=Lus10039463.BGIv1.0 annot-version=v1.0 MGGCASARRGCVVFPFPSKRKVNVEDKKKNDNGEGGRRRRKSRRRIIKRRFSSRKVETADPSRLTDRAFSNPVFQGSMDGTWCDATSVLESEWDDEFYSV YEDGSVIDSYENGSSIGVHSPRDLSARDYQHNAGLAPDNVLPNSTGNGPSGSSTAMNLPPKHPNSSFKLNDTHKEVNSASAEEVSCVSVVGDARGAADSH CGVLQNNCLPCLSSTVPTVEKKKSINSDTASSKKKSMLRLSFKWREEHTPTLFAPKGLSQRPLAGSTFPYCPADKKISGCWSPIEPSTFKVRGRNYFRDK KKEPAPECVAFSPFAADIFLSQRKIPHIARFVELPTFSSYDEVPAVLVVNVQVPLYPASILQGENDGEGMNLVMYFKLSESYSNELPLHFRENIMKLIND EVERVKGFPLDTIAPFRERLKILGRLANVNELQLGATEKKLVNAYNEKPVLSRPQHEFYLGENYFEIDLDMHRFSYISRKGFETFHNRLKYCVLDFGLTI QGYKSEDLPEHMLCCMRLNEIDHTKYSQLGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	0	1
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	1.0	0.8861
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	4.5	0.8535
AT3G28430			unknown protein		Lus10011235 [exp]	5.3	0.8608
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	6.0	0.8306
AT1G06510			unknown protein		Lus10001505 [exp]	6.3	0.8536
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	6.5	0.8486
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	6.5	0.8155
AT1G71820		SEC6	SEC6 (.1.2)		Lus10020177 [exp]	7.0	0.8463
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	7.1	0.8565
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	11.7	0.8201

Compare expression of checked genes

Lus10039463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.