Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24140 194 / 1e-59 Matrixin family protein (.1) AT1G70170 191 / 2e-58 MMP matrix metalloproteinase (.1) AT1G59970 183 / 2e-55 Matrixin family protein (.1) AT4G16640 162 / 1e-47 Matrixin family protein (.1) AT2G45040 137 / 6e-38 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005605 [exp] 522 / 0 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10035221 [exp] 366 / 6e-128 AT1G24140 216 / 1e-67 Matrixin family protein (.1) Lus10014512 [exp] 222 / 3e-71 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10032175 [exp] 221 / 8e-71 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10030662 [exp] 175 / 2e-52 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10004728 [exp] 169 / 4e-50 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10028955 [exp] 164 / 4e-48 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 163 / 2e-47 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10008449 [exp] 146 / 1e-44 AT1G24140 57 / 9e-11 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027700 [exp] 232 / 4e-75 AT1G59970 219 / 5e-69 Matrixin family protein (.1) Potri.013G033200 [exp] 232 / 4e-75 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.008G027975 [exp] 223 / 1e-71 AT1G59970 216 / 4e-68 Matrixin family protein (.1) Potri.008G027500 [exp] 220 / 2e-70 AT1G59970 219 / 2e-69 Matrixin family protein (.1) Potri.013G100400 [exp] 216 / 3e-69 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.012G104600 [exp] 214 / 2e-67 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.015G103900 [exp] 206 / 3e-64 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.008G027600 [exp] 193 / 4e-60 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.019G073400 [exp] 189 / 1e-58 AT1G70170 215 / 2e-67 matrix metalloproteinase (.1) Potri.019G073800 [exp] 189 / 2e-58 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10039464 pacid=23175484 polypeptide=Lus10039464 locus=Lus10039464.g ID=Lus10039464.BGIv1.0 annot-version=v1.0 ATGCTAACCAACTCCTCAACACCATCTCCATTTGCTTTCCTCCAACACCTCAAAGGTTGTCACAAGGGCGACCACCTCAAAGACATTTCTAAACTCAAAC ACTACCTCGAGAAATTTGGATACTTGGACTACAATATTAATAGCAATATTCCGAAATCCAATCACTCCAAAGACGACAACTACTTCGACCACCTCCTCGA GGAAGCCATCAAAACTTACCAAACCAACTACCATTTGAACACTACTGGAGCTCTCGACTCCGACACTGTCGCCACTATGATGTCCCCACGTTGCGGTGTG GCTGACATTGTCAATGGTACCAACTGGATGCAAACCCACCACCACAAGCCAACTGGCGGACGCCTTCATACCGTCTCCCATTTCACCTTCTTCAATGGAA ATCCTAAGTGGAGAGCCTCAAAGACGAGGCTCACTTATGGGTTCCTCCCTGGAACCCCAGCTGCAGCTATGCAAGCTGTGTCAAAAGCTTACTTGACATG GTCCCAAAACACGCACTTCAAGTTCCAAAGGGTCAGTGGTGGGAACAAGCCCGATATGACGATTGGGTTCCACAGCCGGAACCATGGGGATGGGGCACCT TTCGAAGGGCCAGGTGGGACGCTCGCTCATGCGTTTGCCCCTGAGGATGGGAGGTTTCACTATGATGAGGAGGAACCATGGGGGGTAGGGAGCCCGGATG CGTTCGACCTCGAGACTGTCGCACTGCACGAAATTGGGCATCTCCTAGGGCTTGGACATAGCTCCGTTCAGGGAGCAATTATGTACCCGAGAATTGCTAT AGGAACTACACAGAGCCTGCACCAGGATGACATCCAGGGTATTAAGGTTTTGTATGGCGTTTAA
AA sequence Show only first row Show all	>Lus10039464 pacid=23175484 polypeptide=Lus10039464 locus=Lus10039464.g ID=Lus10039464.BGIv1.0 annot-version=v1.0 MLTNSSTPSPFAFLQHLKGCHKGDHLKDISKLKHYLEKFGYLDYNINSNIPKSNHSKDDNYFDHLLEEAIKTYQTNYHLNTTGALDSDTVATMMSPRCGV ADIVNGTNWMQTHHHKPTGGRLHTVSHFTFFNGNPKWRASKTRLTYGFLPGTPAAAMQAVSKAYLTWSQNTHFKFQRVSGGNKPDMTIGFHSRNHGDGAP FEGPGGTLAHAFAPEDGRFHYDEEEPWGVGSPDAFDLETVALHEIGHLLGLGHSSVQGAIMYPRIAIGTTQSLHQDDIQGIKVLYGV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	0	1
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	1.7	0.9856
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	2.4	0.9593
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	2.4	0.9761
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	2.4	0.9788
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	3.5	0.9706
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	5.0	0.9619
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010866 [exp]	5.7	0.9027
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	6.7	0.9058
AT1G69630			F-box/RNI-like superfamily pro...		Lus10023042 [exp]	7.3	0.8996
AT3G47570			Leucine-rich repeat protein ki...		Lus10030845 [exp]	7.7	0.9277

Compare expression of checked genes

Lus10039464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.