Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14940 439 / 3e-149 Major facilitator superfamily protein (.1) AT3G01350 416 / 9e-140 Major facilitator superfamily protein (.1) AT1G22540 314 / 2e-100 Major facilitator superfamily protein (.1) AT1G72140 287 / 6e-90 Major facilitator superfamily protein (.1) AT1G72125 284 / 7e-89 Major facilitator superfamily protein (.1) AT1G72130 276 / 3e-87 Major facilitator superfamily protein (.1.2) AT1G22550 278 / 1e-86 Major facilitator superfamily protein (.1) AT1G72120 276 / 5e-86 Major facilitator superfamily protein (.1) AT1G22570 268 / 2e-82 Major facilitator superfamily protein (.1) AT2G37900 266 / 8e-82 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005603 [exp] 780 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10032177 [exp] 555 / 0 AT5G14940 597 / 0.0 Major facilitator superfamily protein (.1) Lus10014510 [exp] 553 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10016932 [exp] 327 / 9e-103 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 320 / 3e-102 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 273 / 9e-85 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024340 [exp] 266 / 1e-81 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10012663 [exp] 256 / 2e-78 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 235 / 4e-70 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G068500 [exp] 513 / 3e-178 AT5G14940 631 / 0.0 Major facilitator superfamily protein (.1) Potri.017G152800 [exp] 501 / 9e-174 AT5G14940 645 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 309 / 2e-98 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 298 / 5e-94 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 296 / 3e-93 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 290 / 4e-91 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 290 / 4e-91 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 287 / 5e-90 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 287 / 7e-90 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 287 / 7e-90 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10039465 pacid=23175678 polypeptide=Lus10039465 locus=Lus10039465.g ID=Lus10039465.BGIv1.0 annot-version=v1.0 ATGCCGCCGCCTCAACAAACCATGCTGCCTCCTCATCGTCGTAGAGAAATAGATTCTCTTGATGTTGTGGTTAAATGGATTGAAACAGTGATCGCTGGAG TGGAGAGACAGTCAATAACTGGATTGGCTTCACTTCCATGCTCCCTCTCCTCGTCGCTTCCCTGTCAGATTCCTAGTGGGGACGTGCGCCTCTCCGGTTT TGCTCTTGCTTCCTCTGCACGTATTGTACTACGTTGTTGGGCATTGACATCAACGGCGTTAACATGGGGAGCGTCTCCATCAACCAGTATGAGCTATTCA TTCCTATTTGGGTCGCTGTGTCTCATCTCTTTAGGGCAGGGCGGATACAATCCATCCCTACAAGCATTTGGAGCAGAGCAATTGGATGATAGTGAGGATG AACTTCCATGCACAAATTCAGACGACGACAACAATAGCAAGTCCAGCCTCAAGACTCTCTTCTTCCAGTGGTGGTACTTTGGCGTATGCGCTGGGAGCTT AATGGGTGTTATGGTCATGTCTTACATTCAGGACACCGTCGGGTGGGTCTTAGGATTTGCTATCCCGACTCTTTCGATGATCACATCAATGGCATTGTTC TGCTTAGGTACCAACATTTACCGCTACAAACAGAAGCAGGATTGCATCAGCATTGTTCGTGTTTTTAAGGATGCTGCCAATAAGGTTAAGATCTTTAGAA TGATCGCTTTGTGTTCCGTGAAACCTGATGGCGCTGAGCTAGAGCTTCAAGAACAGGCCCTCTGTAGTGGAGAAAAGTACATCAATGCAGTGAAGACAGT GGCAATGGAGGAGAAGTGTTCAGGACATGGGACAGAATTTGTACAAAATGTGAAAACTGTGATGGGTCTGCTCCCAATTTGGGGGATGTTGTTGCCATTC GCAGTCATATTCCAACAACCAGCCACGTTCTTCACAAAGCAGGGGATGACTATGGAGAGAAGTATCGGAACGAATTTCATTATCCCACCTGCTACCCTCC AGAGCTCAATTACCATCTCAATCATCCTACTAATGCCCCTCTACGACAAGATTCTGATCCCCATTTCAAGATTCTTAACTCGTAGGGAGAAGGGGATAAG CGTGATGGAGAGGATGGGAATTGGGATGTTCCTTTCCGTGATAGCCATGATCATTGCGGCCTTAGTTGAAGAGAAGAGGTTAGAAATATGTAGAGAAGAG GACCAAACAGATAGTACTAACAGTAATGTCCCAATGAAGATATTCTGGCTGCTTCCTCAGTATATTCTGTTGGGGATTTCAGACATATTCACGGTGGTTG GAATGCAGGAGTTCTTCTATGGAGAAGTTCCGGTAAAGTTGAGAACTTTGGGGATTGCTCTGTACACGAGTGTTTTTGGTGTGGGGAGCTTCATGAGCGC AACGCTGATATGTTTGGTGGAAGTGTTTGCTAGTTGGAGGAAGGAGAAGAGTTGGTTTAGTGACGATATGAGGGAAGCTCGGCTTGATAAGTACTATTGG CTTCTGGCGATCCTGAGTTCTGTGAGCTTGCTTTTGTATTTCATCCTGTGCAAGTTTTACAGGAGTAGGAGTGACTATGAACAGGTGGTGCAGGATGATG ATGATGATGATGATGGTAGACCTTAA
AA sequence Show only first row Show all	>Lus10039465 pacid=23175678 polypeptide=Lus10039465 locus=Lus10039465.g ID=Lus10039465.BGIv1.0 annot-version=v1.0 MPPPQQTMLPPHRRREIDSLDVVVKWIETVIAGVERQSITGLASLPCSLSSSLPCQIPSGDVRLSGFALASSARIVLRCWALTSTALTWGASPSTSMSYS FLFGSLCLISLGQGGYNPSLQAFGAEQLDDSEDELPCTNSDDDNNSKSSLKTLFFQWWYFGVCAGSLMGVMVMSYIQDTVGWVLGFAIPTLSMITSMALF CLGTNIYRYKQKQDCISIVRVFKDAANKVKIFRMIALCSVKPDGAELELQEQALCSGEKYINAVKTVAMEEKCSGHGTEFVQNVKTVMGLLPIWGMLLPF AVIFQQPATFFTKQGMTMERSIGTNFIIPPATLQSSITISIILLMPLYDKILIPISRFLTRREKGISVMERMGIGMFLSVIAMIIAALVEEKRLEICREE DQTDSTNSNVPMKIFWLLPQYILLGISDIFTVVGMQEFFYGEVPVKLRTLGIALYTSVFGVGSFMSATLICLVEVFASWRKEKSWFSDDMREARLDKYYW LLAILSSVSLLLYFILCKFYRSRSDYEQVVQDDDDDDDGRP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	0	1
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Lus10029101 [exp]	1.4	0.7622
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10003920 [exp]	8.7	0.7693
AT5G14940			Major facilitator superfamily ...		Lus10005603 [exp]	10.0	0.7142
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043339 [exp]	16.3	0.7227
AT5G20885			RING/U-box superfamily protein...		Lus10019507 [exp]	18.9	0.6969
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10013641 [exp]	19.9	0.7103
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	20.6	0.7556
AT3G54570			Plant calmodulin-binding prote...		Lus10039544 [exp]	20.8	0.6929
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	22.2	0.7176
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006955 [exp]	24.4	0.6665

Compare expression of checked genes

Lus10039465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.