Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04690 254 / 3e-86 Pyridoxamine 5'-phosphate oxidase family protein (.1.2) AT3G03890 50 / 4e-07 FMN binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039452 [exp] 317 / 4e-110 AT2G04690 201 / 7e-65 Pyridoxamine 5'-phosphate oxidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470300 [exp] 303 / 3e-105 AT2G04690 276 / 3e-95 Pyridoxamine 5'-phosphate oxidase family protein (.1.2) Potri.013G057700 [exp] 54 / 2e-08 AT3G03890 429 / 6e-153 FMN binding (.1.2) Potri.019G035200 [exp] 54 / 3e-08 AT3G03890 452 / 4e-161 FMN binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039466 pacid=23175552 polypeptide=Lus10039466 locus=Lus10039466.g ID=Lus10039466.BGIv1.0 annot-version=v1.0 ATGAATAATATCATATGTGTGTCCATCTGTGTCTTTGTATTCCTGTTGGCGAATTCGGTGCAGGGAAGAAGGCCGTTAGCAGTCAACAAGCCTGACCCGA ATAATGCTGCTGCAACATCTCGTTGGCTTGTCTCCCAGAACTCTTGGGGAGTCCTCAATACTTTATCAACTGAGTTGGGGGGAGCACCATTCGGGAATGT TGTTTCATTCAGCGATGGAGAACCTGGTAAAGGTGCTGGAGTACCGTACTTCTATCTGACGACTCTTGATCCAACTGCGAGAAACGCAATGAAAGACCAG AGGTCATCTTTCACTATCAGTGAGTATCCTTTAGCAACTTGCGGAAAGGCCGACCCAGAGAACCCTACTTGTGCCAAAATTACACTCACCGGAAAGTTGA TACCTGTTGACGATAAATCTAAGGAAGCAGAATTCGCTCGAAATGCCTTGTTCACTAAGCATCCAGAGATGAAGGGGTGGCCTAAGGGTCATGATTTCCA GATATACAAGCTGGTGATTGAAGACATATTCTTGATAGATTGGTTTGGTGGTCCGAAACCTCTCACAGTTGAGGAATACCTGAAAGCTAAGATTATCCCA ATGGGAAATGAATACAAATGTGGTAATTTATTGAGCTGTTTTTTGCGGGGTTGCCTTTCTCAACTACACAGGTCTCTTGCAACTTACAGCCACAAATCTG ATGACATTCTCTGA
AA sequence Show only first row Show all	>Lus10039466 pacid=23175552 polypeptide=Lus10039466 locus=Lus10039466.g ID=Lus10039466.BGIv1.0 annot-version=v1.0 MNNIICVSICVFVFLLANSVQGRRPLAVNKPDPNNAAATSRWLVSQNSWGVLNTLSTELGGAPFGNVVSFSDGEPGKGAGVPYFYLTTLDPTARNAMKDQ RSSFTISEYPLATCGKADPENPTCAKITLTGKLIPVDDKSKEAEFARNALFTKHPEMKGWPKGHDFQIYKLVIEDIFLIDWFGGPKPLTVEEYLKAKIIP MGNEYKCGNLLSCFLRGCLSQLHRSLATYSHKSDDIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Lus10039466 [exp]	0	1
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Lus10039452 [exp]	1.4	0.8948
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	3.9	0.9180
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	22.0	0.8925
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10011099 [exp]	23.2	0.8909
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10026486 [exp]	25.5	0.8607
AT5G09850			Transcription elongation facto...		Lus10003853 [exp]	27.0	0.8833
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	28.1	0.8822
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10013175 [exp]	29.5	0.8757
AT2G24550			unknown protein		Lus10026939 [exp]	29.8	0.8936
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10008084 [exp]	31.5	0.8606

Compare expression of checked genes

Lus10039466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.