Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01370 909 / 0 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 448 / 3e-143 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 431 / 3e-136 ATCFM3A CRM family member 3A (.1) AT4G29750 427 / 3e-135 CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 421 / 2e-132 ATCFM3B CRM family member 3B (.1) AT5G16180 319 / 3e-96 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT2G28480 95 / 2e-20 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 91 / 3e-19 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 87 / 6e-18 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT4G31010 70 / 2e-12 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039451 [exp] 625 / 0 AT3G01370 426 / 4e-140 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10009031 [exp] 436 / 2e-138 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 434 / 5e-138 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10022091 [exp] 436 / 1e-136 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 437 / 4e-134 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10027610 [exp] 413 / 6e-130 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10033576 [exp] 342 / 1e-104 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10017618 [exp] 144 / 1e-36 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10041459 [exp] 99 / 2e-21 AT2G28480 417 / 3e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350801 [exp] 970 / 0 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 472 / 6e-153 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 454 / 8e-145 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.017G116700 [exp] 239 / 8e-67 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G148901 [exp] 184 / 6e-52 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G176900 [exp] 93 / 2e-19 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 89 / 9e-19 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 90 / 1e-18 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 70 / 5e-12 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 70 / 7e-12 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10039467 pacid=23175615 polypeptide=Lus10039467 locus=Lus10039467.g ID=Lus10039467.BGIv1.0 annot-version=v1.0 ATGCTACTGTTTTCATACTCTCCTTTCTCCTCATCTCCGTCCATAATACCTCTCACTTCTCCTCGCTTCCCACTCCTTAAATCCCCTTTTCTCCCAACTT TCGAAACTCCACCTAAACCCTTCTCCCCCTGTTCCTCCTTACCCAATTCCCACTCCGAGACACTTCCCCAGACCGTCATCCAGCGTATCGCCGACAAGCT CCGGTCACTTGGAGTCTCCCAGGATGACTCCAACACGAAAACTTCTGCACCCGAATTCCAGACCCGGGTACCCGGCGAAATCTTCATCCCTTTGCCTGAT GGGTTGCCCAAGCACCGGGTGGGTCATACTCTGGACCCTAGCTGGAGAACTCCGCAGATGTCCCGGTCTGGGAATTCCATGGAGTTGAGGAAAGAGAGAT TCAAGAGGATGAAGGAGGAAAAGGAAAAGGGAAGGGTTCCCACTCTGGCGGGGCTGACCTTGCCGGATTCCGAGCGAAAGAGGCTGACAACGATTGGGAT TAAAGAGAAGAGGACACTCAAGGTTGGGAAACCTGGAATTACCGAAGGGATTGTCAATGGGACCCACGAGAGGTGGAGGCATGCCGAGGTGGTTAAGATT GTGTGCGATGATCTTTCTAAATTGAGCATGAAGAGGACTCATGACGTGTTGGAGAGAAAAACCGGAGGTTTGGTAGTTTGGAGAAGCGGAAGTACAATAG TATTGTATAGGGGTGCCAATTACAAATATCCATACTTCATAGACGAAAATAAGTCGGATGACGAGTCCTCACCTGATGCTGCACTTGTGAACGACGTGGA CACTAAGACCTTGGAGAACTTTTCACCTGCAATGGATGGTCGAAACATTCGACCAACTAGTATGGGTCAACGAAAGATGATCAAAGGTGTTGGTTTACCT AACCGGGTACGGTTTCAGTTACCAGGGGAGGCACAACTTGCAGAAGAAGCAGACTGCTTATTAGATGGATTAGGCCCACGTTTTACCGATTGGTGGGGAT ATGATCCACTCCCAGTGGATGCTGATCTTTTGCCTGCTGTTGTTCCTGGTTACCGTAGACCCTTCCGTTTGCTTCCTTTTGGTATCCAACCTAAGCTAAC TAATGATGAGATGACCACCTTAAGAAGGCTTTCACGACCTTTGCCCTGCCATTTTGCACTAGGCAAGAACAGGAAACATCAAGGGCTAGCTGCTGCCATC GTCAAGCTCTGGGAAAAATGTGAGATAGCAAAAATTGCTGTCAAGAGGGGAGTACAGAACATCGATAGTGAGTTGATGGCTGAAGAGTTGCAGTGGCTTA CTGGAGGTACTCTGCTTTCAAGGGATATGGAATTCATTGTCTTTTATAGAGGGAAGGATTTTCTTCCTGCTGCTGTGTCTTCTGCCATAACTGAGCGAAG AAGAAGCCCCACAATGCATGGTGATAACCTGAAGATAGCACACAGCATTTCAGGATTGGATAAGAGTCCTAAGGAACTTGAAGGCGACACTGGTAACAAT ACTGATCCAGATGGATCTGATACTCCCACTAACCAGAGAATTTATATACCTGAAAATCGGAAGCAATGGTTGATTGAGGCAGCCATGAAAAAGACTAGTG AGAAATTAGCCGTGACTATAGACAAGAGAGTAACGGCAGAGAAGAAAGTAGCCGAGCTTGAGGAAGCCGAAGATTCACAACAACCCGAGGTGGCGATGGA AGTTATTTCCGAAGAAGAAAGATACATGCTCAGGAAGGTTGGCTTGAAAATGAAACCTTTCCTACTGATAGGTAGAAGGGGGGTTTTTGATGGAACGGTT GAAAACATGCATCTGCACTGGAAATATAGGGAACTTGTGAAGCTACTGTCTAGCGAGAAAAGCTTTGAAGCTGCTCATCAAGTAGCCAAGACTTTGGAAG CTGAAAGTGGAGGAATACTAGTGGCCGTGGAAAGTGTCACCAAGGGTCATGTGATCATTGTATATCGTGGAAAGAATTATAAAAGACCGCCGGTATTGAG GCCCCAAACACTCCTTAGTAAAAGGGAAGCAATGAAGCGTTCTCTAGAAGCACAGCGTCATAAGTCTTTGAAACTTCATGTTCTGGAGCTTACCAAAAAT ATTGAAGACCCAAAAGAGAACATGGTCGAAGAAGAGCTTAACATGTCTGCTAATCTTGATCAGCAGTCTGAATTAGTTATTCCAAATCTATCCGAAGCTG AGAGCGAGCAACAGATTACTCAGAATGGGACTAGCTCAGCGGTATCTGAAGTTGTGACTGCAAGAAGTGATCCGGAGTCGTCATCATCATCAGGCAAGCA TGTTCAGGGAAGTAAACTAGTTGCTACGAATGATGGAGCTATAGATTCAACCCCTTCTCAGCAGTCAGAAAGAAGAAATTTTACTCCCCTTGCCAATGCT GAGCATTCTGTTTCTGGTGCTGAAACATCTGTATTGAATGTACGAAAAGAGAAGAAGAAGATGATACCATCTAGGGTTCAACTTTCCAACAGGGACAAGC TTATCCTACGTAAGCAGGCTCTCAAAATGAAAAACCGCCCAGTTCTTGCAGTAGGGAAAAATAACATCATGACTGGAGTTGGAAAAACTATAAAATCTCA CTTTGAGAGGTATCCACTTGCTATCGTGAATGTAAAAGGCAGAGCTAAGGGAACTTCTGTCCAGGAGGTGGTTTTCCAGTTAGAGCAAGAGACAGGAGGT GTTTTCGTATCCCAGGAACCTAGCAAGGTCATACTTTATAGGGGCTGGGGAGCAGAAGATGAATCAGGCTTTGGAAACAAGAAAAAGAAGGAGAGTCGAC AGCTCCAACAGATTGGGAAGGAATGTGACGAATCGGTGAGGCCTTCCATTTCCCCAGAGCTCATGAAGGCAATCCGCCTGGAATGTGGACTGATGGATAG CAAAGCGCAGAACGCGAAGCAATGA
AA sequence Show only first row Show all	>Lus10039467 pacid=23175615 polypeptide=Lus10039467 locus=Lus10039467.g ID=Lus10039467.BGIv1.0 annot-version=v1.0 MLLFSYSPFSSSPSIIPLTSPRFPLLKSPFLPTFETPPKPFSPCSSLPNSHSETLPQTVIQRIADKLRSLGVSQDDSNTKTSAPEFQTRVPGEIFIPLPD GLPKHRVGHTLDPSWRTPQMSRSGNSMELRKERFKRMKEEKEKGRVPTLAGLTLPDSERKRLTTIGIKEKRTLKVGKPGITEGIVNGTHERWRHAEVVKI VCDDLSKLSMKRTHDVLERKTGGLVVWRSGSTIVLYRGANYKYPYFIDENKSDDESSPDAALVNDVDTKTLENFSPAMDGRNIRPTSMGQRKMIKGVGLP NRVRFQLPGEAQLAEEADCLLDGLGPRFTDWWGYDPLPVDADLLPAVVPGYRRPFRLLPFGIQPKLTNDEMTTLRRLSRPLPCHFALGKNRKHQGLAAAI VKLWEKCEIAKIAVKRGVQNIDSELMAEELQWLTGGTLLSRDMEFIVFYRGKDFLPAAVSSAITERRRSPTMHGDNLKIAHSISGLDKSPKELEGDTGNN TDPDGSDTPTNQRIYIPENRKQWLIEAAMKKTSEKLAVTIDKRVTAEKKVAELEEAEDSQQPEVAMEVISEEERYMLRKVGLKMKPFLLIGRRGVFDGTV ENMHLHWKYRELVKLLSSEKSFEAAHQVAKTLEAESGGILVAVESVTKGHVIIVYRGKNYKRPPVLRPQTLLSKREAMKRSLEAQRHKSLKLHVLELTKN IEDPKENMVEEELNMSANLDQQSELVIPNLSEAESEQQITQNGTSSAVSEVVTARSDPESSSSSGKHVQGSKLVATNDGAIDSTPSQQSERRNFTPLANA EHSVSGAETSVLNVRKEKKKMIPSRVQLSNRDKLILRKQALKMKNRPVLAVGKNNIMTGVGKTIKSHFERYPLAIVNVKGRAKGTSVQEVVFQLEQETGG VFVSQEPSKVILYRGWGAEDESGFGNKKKKESRQLQQIGKECDESVRPSISPELMKAIRLECGLMDSKAQNAKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039467 [exp]	0	1
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	2.0	0.9639
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	3.0	0.9517
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Lus10019959 [exp]	3.5	0.9264
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	3.5	0.9503
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	4.5	0.9579
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	5.9	0.9332
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	5.9	0.9465
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	7.9	0.9315
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	8.8	0.9396
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	9.4	0.9330

Compare expression of checked genes

Lus10039467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.