Plant FIBer expression Database

Lus10039468 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04700 216 / 7e-73 ferredoxin thioredoxin reductase catalytic beta chain family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039449
[exp]
323 / 4e-115 AT2G04700 217 / 2e-73 ferredoxin thioredoxin reductase catalytic beta chain family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G350900
[exp]
211 / 4e-71 AT2G04700 231 / 1e-79 ferredoxin thioredoxin reductase catalytic beta chain family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02943 FeThRed_B Ferredoxin thioredoxin reductase catalytic beta chain
Representative CDS sequence
>Lus10039468 pacid=23175585 polypeptide=Lus10039468 locus=Lus10039468.g ID=Lus10039468.BGIv1.0 annot-version=v1.0
ATGACTCTTCAAGCCGCTTCTTGTAGCTTCGCCGGTGTCTCTTCCTTCCCCTCCCCGCCTTCAACAGCTTACCGTCCTCACTGCCACCATGTCCGTACCA
CCGTTGTTCGTGCTCAAGCTGTTGATCCCAAGGACAAGTCTGTTGAAATAATGAGGAAGTTCTCGGAGCAGTACGCTCGTAGGTCCGGGACTTACTTCTG
CTCCGATAAGGGAGTCACTTCCGTTGTTATTAAGGGTCTGGCGGAGCATAAAGATTCATTGGGTGCACCTCTGTGCCCTTGTAGGCATTATGATGACAAA
GCTGCGGAAGCAGGGCAGGGCTTTTGGAACTGCCCTTGTGTCCCCATGAGAGAGAGGAAGGAGTGTCATTGCATGCTTTTTCTCACCCCAGAAAATGATT
TTGCCGGCAAAGATCAGGTAATGCTAGCTCCTTTCATTGATTACATACCGGGCCCTTCTTGTAAAGCGAACAGACTCTGCCCTGGTTCATTCACAAACGC
ATGA
AA sequence
>Lus10039468 pacid=23175585 polypeptide=Lus10039468 locus=Lus10039468.g ID=Lus10039468.BGIv1.0 annot-version=v1.0
MTLQAASCSFAGVSSFPSPPSTAYRPHCHHVRTTVVRAQAVDPKDKSVEIMRKFSEQYARRSGTYFCSDKGVTSVVIKGLAEHKDSLGAPLCPCRHYDDK
AAEAGQGFWNCPCVPMRERKECHCMLFLTPENDFAGKDQVMLAPFIDYIPGPSCKANRLCPGSFTNA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G04700 ferredoxin thioredoxin reducta... Lus10039468
[exp]
0 1
AT2G04700 ferredoxin thioredoxin reducta... Lus10039449
[exp]
1.0 0.9773
AT4G22890 PGR5-LIKEA, PGR... PGR5-LIKE A (.1.2.3.4.5) Lus10006710
[exp]
2.4 0.9664
AT1G07280 Tetratricopeptide repeat (TPR)... Lus10001206
[exp]
3.5 0.9403
AT2G39000 Acyl-CoA N-acyltransferases (N... Lus10009229
[exp]
7.2 0.9231
AT1G51110 Plastid-lipid associated prote... Lus10010444
[exp]
7.3 0.9422
AT5G47240 ATNUDT8 nudix hydrolase homolog 8 (.1) Lus10040169
[exp]
8.3 0.9180
AT4G22890 PGR5-LIKEA, PGR... PGR5-LIKE A (.1.2.3.4.5) Lus10014135
[exp]
11.0 0.9356
AT3G52180 ATSEX4, SEX4, A... STARCH-EXCESS 4, DUAL-SPECIFIC... Lus10037924
[exp]
11.2 0.9103
AT3G47070 unknown protein Lus10005866
[exp]
13.0 0.9335
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Lus10028451
[exp]
15.5 0.9315

Lus10039468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.