Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28210 194 / 1e-63 SAP12, PMZ STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1) AT2G41835 127 / 3e-36 C2H2ZnF zinc finger (C2H2 type, AN1-like) family protein (.1) AT3G57480 124 / 2e-35 C2H2ZnF zinc finger (C2H2 type, AN1-like) family protein (.1) AT5G48205 62 / 5e-12 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039448 [exp] 303 / 1e-106 AT3G28210 202 / 1e-66 STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1) Lus10007540 [exp] 132 / 8e-38 AT2G41835 354 / 1e-123 zinc finger (C2H2 type, AN1-like) family protein (.1) Lus10012196 [exp] 131 / 1e-37 AT2G41835 357 / 8e-125 zinc finger (C2H2 type, AN1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138500 [exp] 217 / 4e-73 AT3G28210 199 / 4e-66 STRESS-ASSOCIATED PROTEIN 12, zinc finger (AN1-like) family protein (.1) Potri.006G052200 [exp] 131 / 1e-37 AT2G41835 360 / 6e-126 zinc finger (C2H2 type, AN1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10039469 pacid=23175675 polypeptide=Lus10039469 locus=Lus10039469.g ID=Lus10039469.BGIv1.0 annot-version=v1.0 ATGTCAGGTGGAACCGAAGCTTTCCCAGATTTGGGTCGCCATTGCCAGCATCAGGAATGCCACCAGCTCGACTTCTTACCTTTCAAATGTGACGGTTGCC AACAGGCTTTCTGCCTGGAACACAGATCGTTCAAGGCCCACTCCTGCCCAAAATCCGACCTCAACAGCCGCAAAGTGGTGGTCTGCGACATATGTTCGAC CTCCATCGAGACCACCGGCCGCGGCCAGGGAGACGAGAAGGCCATCTTGGAGAAGCACGAGAAGTCAGGTGAATGTGATCCCATTAAGAAGAAGAAGCCC ACATGTGCTGTTCGGAGGTGTAAAGAGATACTCACCTTCTCCAATACATGCGTCTGCAAAACCTGCCAGATTAAGGTTTGCTTGAACCACAGGTTCCCCG CCGACCATCAATGCAAGAAATCCTCTCCCACTGTAGTGGCTAATCCCAGAAGCAGCAGCAGCAGCAGCAGCAGGTTTTTGCTTGCTTTTGCTTCAAGAAA TGCCAAAGATTGTGCCAAGAATGACAAACATCCTTCCCCCCTCTTCTTCCAGGGCTCCATCATCTATTAG
AA sequence Show only first row Show all	>Lus10039469 pacid=23175675 polypeptide=Lus10039469 locus=Lus10039469.g ID=Lus10039469.BGIv1.0 annot-version=v1.0 MSGGTEAFPDLGRHCQHQECHQLDFLPFKCDGCQQAFCLEHRSFKAHSCPKSDLNSRKVVVCDICSTSIETTGRGQGDEKAILEKHEKSGECDPIKKKKP TCAVRRCKEILTFSNTCVCKTCQIKVCLNHRFPADHQCKKSSPTVVANPRSSSSSSSRFLLAFASRNAKDCAKNDKHPSPLFFQGSIIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039469 [exp]	0	1
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	2.0	0.9875
AT1G17860			Kunitz family trypsin and prot...		Lus10013731 [exp]	7.5	0.9833
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	9.1	0.9869
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	10.1	0.9866
AT1G11925			Stigma-specific Stig1 family p...		Lus10020831 [exp]	11.0	0.9846
AT1G17860			Kunitz family trypsin and prot...		Lus10007892 [exp]	11.2	0.9815
					Lus10032178 [exp]	11.3	0.9864
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	11.5	0.9784
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001103 [exp]	11.6	0.9796
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	14.4	0.9804

Compare expression of checked genes

Lus10039469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.